A B C D E F G H I L M N P R S T V W misc
.Coda.Options | Options settings for the codamenu driver |
as.array.mcmc.list | Conversions of MCMC objects |
as.matrix.mcmc | Conversions of MCMC objects |
as.mcmc | Markov Chain Monte Carlo Objects |
as.mcmc.list | Replicated Markov Chain Monte Carlo Objects |
as.mcmc.mcmc.list | Conversions of MCMC objects |
as.ts.mcmc | Coerce mcmc object to time series |
autocorr | Autocorrelation function for Markov chains |
autocorr.plot | Plot autocorrelations for Markov Chains |
bugs2jags | Convert WinBUGS data file to JAGS data file |
chanames | Named dimensions of MCMC objects |
change.tfoption | Interactively modify logical codamenu options. |
coda.global.assign | Cross-platform assignment to global environment |
coda.options | Options settings for the codamenu driver |
codamenu | Main menu driver for the coda package |
codamenu.anal | Submenus for the coda package |
codamenu.diags | Submenus for the coda package |
codamenu.main | Submenus for the coda package |
codamenu.options | Submenus for the coda package |
codamenu.options.geweke.bin | Submenus for the coda package |
codamenu.options.geweke.win | Submenus for the coda package |
codamenu.options.heidel | Submenus for the coda package |
codamenu.options.plot | Submenus for the coda package |
codamenu.options.raftery | Submenus for the coda package |
codamenu.options.stats | Submenus for the coda package |
codamenu.output.header | Submenus for the coda package |
codamenu.ps | Submenus for the coda package |
crosscorr | Cross correlations for MCMC output |
crosscorr.plot | Plot image of correlation matrix |
cumuplot | Cumulative quantile plot |
densplot | Probability density function estimate from MCMC output |
display.coda.options | Options settings for the codamenu driver |
effectiveSize | Effective sample size for estimating the mean |
end.mcmc | Time attributes for mcmc objects |
frequency.mcmc | Time attributes for mcmc objects |
gelman.diag | Gelman and Rubin's convergence diagnostic |
gelman.mv.diag | Gelman and Rubin's convergence diagnostic |
gelman.plot | Gelman-Rubin-Brooks plot |
gelman.preplot | Gelman-Rubin-Brooks plot |
gelman.transform | Gelman and Rubin's convergence diagnostic |
geweke.diag | Geweke's convergence diagnostic |
geweke.plot | Geweke-Brooks plot |
heidel.diag | Heidelberger and Welch's convergence diagnostic |
is.mcmc | Markov Chain Monte Carlo Objects |
is.mcmc.list | Replicated Markov Chain Monte Carlo Objects |
line | Simple linear regression example |
mcmc | Markov Chain Monte Carlo Objects |
mcmc.list | Replicated Markov Chain Monte Carlo Objects |
mcmcUpgrade | Upgrade mcmc objects in obsolete format |
mcpar | Mcpar attribute of MCMC objects |
multi.menu | Choose multiple options from a menu |
nchain | Dimensions of MCMC objects |
niter | Dimensions of MCMC objects |
nvar | Dimensions of MCMC objects |
pcramer | The Cramer-von Mises Distribution |
plot.mcmc | Summary plots of mcmc objects |
plot.mcmc.list | Replicated Markov Chain Monte Carlo Objects |
print.gelman.diag | Gelman and Rubin's convergence diagnostic |
print.geweke.diag | Geweke's convergence diagnostic |
print.heidel.diag | Heidelberger and Welch's convergence diagnostic |
print.mcmc | Markov Chain Monte Carlo Objects |
print.raftery.diag | Raftery and Lewis's diagnostic |
print.summary.mcmc | Summary statistics for Markov Chain Monte Carlo chains |
raftery.diag | Raftery and Lewis's diagnostic |
read.and.check | Read data interactively and check that it satisfies conditions |
read.bugs | Read BUGS output files |
read.bugs.interactive | Read BUGS output files interactively |
read.coda | Read BUGS output files |
read.jags | Read BUGS output files |
read.yesno | Read logical values from the command line |
set.mfrow | Set layout for graphical plots |
spectrum0 | Estimate spectral density at zero |
spectrum0.ar | Estimate spectral density at zero |
start.mcmc | Time attributes for mcmc objects |
summary.mcmc | Summary statistics for Markov Chain Monte Carlo chains |
thin | Thinning interval |
thin.mcmc | Time attributes for mcmc objects |
tidy.up | Submenus for the coda package |
time.mcmc | Time attributes for mcmc objects |
traceplot | Trace plot of MCMC output |
varnames | Named dimensions of MCMC objects |
window.mcmc | Time windows for mcmc objects |
[.mcmc | Extract or replace parts of MCMC objects |