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neurospin.glm_files_layout.html_result

Module: neurospin.glm_files_layout.html_result

Small utility that generates an html page to describe the activations found in an activation SPM, similar to SPM arrays

Author: Lise Favre, Alexis Roche, Bertrand Thirion, 2008–2010

nipy.neurospin.glm_files_layout.html_result.display_results_html(zmap_file_path, mask_file_path, output_html_path, threshold=0.001, method='fpr', cluster_th=0, null_zmax='bonferroni', null_smax=None, null_s=None, nmaxima=4, cluster_pval=0.05)
Parameters :

zmap_file_path, string, :

path of the input activation (z-transformed) image

mask_file_path, string, :

path of the a corresponding mask image

output_html_path, string, :

path where the output html should be written

threshold, float, optional :

(p-variate) frequentist threshold of the activation image

method, string, optional :

to be chosen as height_control in nipy.neurospin.statistical_mapping

cluster_th, scalar, optional, :

cluster size threshold

null_zmax: optional, :

parameter for cluster level statistics (?)

null_s: optional, :

parameter for cluster level statistics (?)

nmaxima: optional, :

number of local maxima reported per supra-threshold cluster