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Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

__init__() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.algorithms.kernel_smooth.LinearFilter method)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.grid_transform.GridTransform method)
(nipy.algorithms.registration.grid_transform.SplineTransform method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Image4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
(nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
(nipy.algorithms.registration.spline_transform.SplineTransform method)
(nipy.algorithms.registration.transform.Transform method)
(nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.regression.AREstimator method)
(nipy.algorithms.statistics.regression.ArrayOutput method)
(nipy.algorithms.statistics.regression.RegressionOutput method)
(nipy.algorithms.statistics.regression.RegressionOutputList method)
(nipy.algorithms.statistics.regression.TOutput method)
(nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.IntrinsicVolumes method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.algorithms.statistics.rft.fnsum method)
(nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.image.SliceMaker method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.image.roi.ContinuousROI method)
(nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROI method)
(nipy.core.image.roi.ROISequence method)
(nipy.core.image.roi.ROIall method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.array_coords.ArrayCoordMap method)
(nipy.core.reference.array_coords.Grid method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
(nipy.core.reference.coordinate_system.CoordinateSystemError method)
(nipy.core.transforms.affines.OrientationError method)
(nipy.interfaces.spm.SpmInfo method)
(nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.batteryrunners.BatteryRunner method)
(nipy.io.imageformats.batteryrunners.Report method)
(nipy.io.imageformats.binaryheaders.BinaryHeader method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.filename_parser.TypesFilenamesError method)
(nipy.io.imageformats.filetuples.FileTuples method)
(nipy.io.imageformats.filetuples.FileTuplesError method)
(nipy.io.imageformats.headers.Header method)
(nipy.io.imageformats.minc.MincError method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.minc.netcdf_fileobj method)
(nipy.io.imageformats.nifti1.Nifti1Extension method)
(nipy.io.imageformats.nifti1.Nifti1Extensions method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.orientations.OrientationError method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
(nipy.io.imageformats.volumeutils.HeaderDataError method)
(nipy.io.imageformats.volumeutils.HeaderTypeError method)
(nipy.io.imageformats.volumeutils.Recoder method)
(nipy.io.imageformats.volumeutils.UnsupportedDataType method)
(nipy.modalities.fmri.fmri.FmriImageList method)
(nipy.modalities.fmri.fmristat.delay.Contrast method)
(nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.Factor method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Formula method)
(nipy.modalities.fmri.formula.RandomEffects method)
(nipy.modalities.fmri.formula.Term method)
(nipy.modalities.fmri.spm.model.SecondStage method)
(nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
(nipy.neurospin.clustering.ggmixture.Gamma method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.gmm.GridDescriptor method)
(nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.datasets.transforms.affine_transform.AffineTransform method)
(nipy.neurospin.datasets.transforms.transform.CompositionError method)
(nipy.neurospin.datasets.transforms.transform.Transform method)
(nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_field.VolumeField method)
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
(nipy.neurospin.eda.dimension_reduction.MDS method)
(nipy.neurospin.eda.dimension_reduction.NLDR method)
(nipy.neurospin.eda.dimension_reduction.PCA method)
(nipy.neurospin.eda.dimension_reduction.eps_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_LE method)
(nipy.neurospin.eda.dimension_reduction.knn_LPP method)
(nipy.neurospin.glm.glm.contrast method)
(nipy.neurospin.glm.glm.glm method)
(nipy.neurospin.glm_files_layout.contrast_tools.Contrast method)
(nipy.neurospin.glm_files_layout.contrast_tools.ContrastList method)
(nipy.neurospin.glm_files_layout.tio.Texture method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
(nipy.neurospin.group.displacement_field.displacement_field method)
(nipy.neurospin.group.displacement_field.gaussian_random_field method)
(nipy.neurospin.group.permutation_test.permutation_test method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample_graph method)
(nipy.neurospin.group.permutation_test.permutation_test_twosample method)
(nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
(nipy.neurospin.image.image.Image method)
(nipy.neurospin.image.image.MaskedImage method)
(nipy.neurospin.segmentation.vem.VemTissueClassification method)
(nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.MultiROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
(nipy.neurospin.spatial_models.parcellation.New_Parcellation method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
(nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.neurospin.statistical_mapping.LinearModel method)
(nipy.neurospin.utils.design_matrix.BlockParadigm method)
(nipy.neurospin.utils.design_matrix.DesignMatrix method)
(nipy.neurospin.utils.design_matrix.EventRelatedParadigm method)
(nipy.neurospin.utils.design_matrix.Paradigm method)
(nipy.neurospin.utils.emp_null.ENN method), [1]
(nipy.neurospin.utils.emp_null.FDR method)
(nipy.neurospin.viz_tools.ortho_slicer.OrthoSlicer method)
(nipy.utils.data.Bomber method)
(nipy.utils.data.DataError method)
(nipy.utils.data.Datasource method)
(nipy.utils.data.VersionedDatasource method)
(nipy.utils.onetime.OneTimeProperty method)
(nipy.utils.tmpdirs.InTemporaryDirectory method)
(nipy.utils.tmpdirs.TemporaryDirectory method)

A

adapt_header() (in module nipy.io.imageformats.header_ufuncs)
add_codes() (nipy.io.imageformats.volumeutils.Recoder method)
add_subjects() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
add_type() (nipy.io.imageformats.filetuples.FileTuples method)
adjacency() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
Affine (class in nipy.algorithms.registration.affine)
affine (nipy.algorithms.registration.grid_transform.GridTransform attribute)
(nipy.algorithms.registration.grid_transform.SplineTransform attribute)
(nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
(nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
affine() (nipy.core.image.image.Image static method)
Affine2D (class in nipy.algorithms.registration.affine)
affine_img_src() (in module nipy.neurospin.viz_tools.maps_3d), [1]
affine_transform_from_array() (in module nipy.io.nifti_ref)
AffineImage (class in nipy.core.image.affine_image)
AffineTransform (class in nipy.core.reference.coordinate_map)
(class in nipy.neurospin.datasets.transforms.affine_transform)
AFNI
all_distances() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
all_fdr() (nipy.neurospin.utils.emp_null.FDR method)
all_fdr_from_pvals() (nipy.neurospin.utils.emp_null.FDR method)
allopen() (in module nipy.io.imageformats.volumeutils)
AnalyzeHeader (class in nipy.io.imageformats.analyze)
AnalyzeImage (class in nipy.io.imageformats.analyze)
angle_axis2euler() (in module nipy.io.imageformats.eulerangles)
angle_axis2mat() (in module nipy.io.imageformats.quaternions)
angle_axis2quat() (in module nipy.io.imageformats.quaternions)
annotate() (nipy.neurospin.viz_tools.ortho_slicer.OrthoSlicer method)
anti_symmeterize() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
append (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
append_io_dim() (in module nipy.core.reference.coordinate_map)
apply() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.spline_transform.SplineTransform method)
(nipy.algorithms.registration.transform.Transform method)
apply_affine() (in module nipy.algorithms.registration.affine)
(in module nipy.neurospin.datasets.transforms.affine_utils)
(in module nipy.neurospin.image.image)
apply_affine_to_tuple() (in module nipy.neurospin.image.image)
apply_orientation() (in module nipy.core.transforms.affines)
(in module nipy.io.imageformats.orientations)
AR1 (class in nipy.modalities.fmri.fmristat.model)
ARcomponents() (in module nipy.modalities.fmri.spm.correlation)
ARcovariance() (in module nipy.modalities.fmri.spm.correlation)
AREstimator (class in nipy.algorithms.statistics.regression)
argmax_feature() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
args (nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.transforms.affines.OrientationError attribute)
(nipy.io.imageformats.filename_parser.TypesFilenamesError attribute)
(nipy.io.imageformats.filetuples.FileTuplesError attribute)
(nipy.io.imageformats.minc.MincError attribute)
(nipy.io.imageformats.orientations.OrientationError attribute)
(nipy.io.imageformats.volumeutils.HeaderDataError attribute)
(nipy.io.imageformats.volumeutils.HeaderTypeError attribute)
(nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
(nipy.neurospin.datasets.transforms.transform.CompositionError attribute)
(nipy.utils.data.DataError attribute)
array_affine_coord() (in module nipy.neurospin.spatial_models.discrete_domain)
array_from_file() (in module nipy.io.imageformats.volumeutils)
array_to_file() (in module nipy.io.imageformats.volumeutils)
ArrayCoordMap (class in nipy.core.reference.array_coords)
ArrayOutput (class in nipy.algorithms.statistics.regression)
as_affine() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
as_base_exp() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_basic() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_byteswapped() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
as_closest_canonical() (in module nipy.io.imageformats.funcs)
as_coeff_exponent() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coeff_factors() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coeff_terms() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coefficient() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_displacements() (nipy.algorithms.registration.grid_transform.GridTransform method)
(nipy.algorithms.registration.grid_transform.SplineTransform method)
as_dummy() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_image() (in module nipy.io.files)
as_independent() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_leading_term() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_numer_denom() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_poly() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_powers_dict() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_real_imag() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_unittest() (in module nipy.io.imageformats.testing.lightunit)
(in module nipy.testing.lightunit)
as_volume_img() (in module nipy.neurospin.datasets.converters)
(nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
asarray() (nipy.io.imageformats.compat.NiftiImage method)
asDict() (nipy.io.imageformats.compat.NiftiImage method)
asNifti1Image() (in module nipy.neurospin.image.image)
assumptions0 (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
atoms() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
autocrop_img() (in module nipy.neurospin.viz_tools.maps_3d)
average_feature() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
average_link_distance() (in module nipy.neurospin.clustering.hierarchical_clustering)
average_link_distance_segment() (in module nipy.neurospin.clustering.hierarchical_clustering)
average_link_euclidian() (in module nipy.neurospin.clustering.hierarchical_clustering)
average_link_graph() (in module nipy.neurospin.clustering.hierarchical_clustering)
average_link_graph_segment() (in module nipy.neurospin.clustering.hierarchical_clustering)
average_log_like() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
averaged_loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
axes() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)

B

background (nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
ball_search() (in module nipy.algorithms.statistics.rft)
BatteryRunner (class in nipy.io.imageformats.batteryrunners)
bayes_factor() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
best_fitting_GMM() (in module nipy.neurospin.clustering.gmm)
Beta (class in nipy.modalities.fmri.formula)
BGMM (class in nipy.neurospin.clustering.bgmm)
bic() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
binaryblock (nipy.io.imageformats.analyze.AnalyzeHeader attribute)
(nipy.io.imageformats.nifti1.Nifti1Header attribute)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader attribute)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader attribute)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader attribute)
BinaryHeader (class in nipy.io.imageformats.binaryheaders)
binomial() (in module nipy.algorithms.statistics.rft)
BipartiteGraph (class in nipy.neurospin.graph.graph)
BlockParadigm (class in nipy.neurospin.utils.design_matrix)
blocks() (in module nipy.modalities.fmri.utils)
BOLD
Bomber (class in nipy.utils.data)
bonferroni() (in module nipy.neurospin.statistical_mapping)
bootstrap_group() (in module nipy.neurospin.utils.reproducibility_measures)
bounding_box() (in module nipy.core.reference.slices)
boxplot_feature() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
BPmatch() (in module nipy.neurospin.graph.BPmatch)
BPmatch_slow_asym_dev() (in module nipy.neurospin.graph.BPmatch)
BrainVisa
bsa_dpmm() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
bsa_dpmm2() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
BSD
build_dmtx() (in module nipy.neurospin.utils.design_matrix)
build_LR() (in module nipy.neurospin.spatial_models.structural_bfls)

C

calculate_scale() (in module nipy.io.imageformats.volumeutils)
calibrate() (nipy.neurospin.group.permutation_test.permutation_test method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample_graph method)
(nipy.neurospin.group.permutation_test.permutation_test_twosample method)
can_cast() (in module nipy.io.imageformats.volumeutils)
cc() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
CCA() (in module nipy.neurospin.eda.dimension_reduction)
centers() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
ChainTransform (class in nipy.algorithms.registration.chain_transform)
change_exponent() (nipy.algorithms.statistics.rft.ECquasi method)
check() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.Gamma method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
check_compatible_height() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
check_data() (nipy.neurospin.eda.dimension_reduction.eps_Isomap method)
(nipy.neurospin.eda.dimension_reduction.MDS method)
(nipy.neurospin.eda.dimension_reduction.NLDR method)
(nipy.neurospin.eda.dimension_reduction.PCA method)
(nipy.neurospin.eda.dimension_reduction.knn_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_LE method)
(nipy.neurospin.eda.dimension_reduction.knn_LPP method)
check_deps() (in module nipy.utils.perlpie)
check_feature_matrices() (nipy.neurospin.graph.graph.BipartiteGraph method)
check_features() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
check_fix() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.batteryrunners.BatteryRunner method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
check_isometry() (in module nipy.neurospin.eda.dimension_reduction)
check_only() (nipy.io.imageformats.batteryrunners.BatteryRunner method)
check_pv() (nipy.neurospin.utils.emp_null.FDR method)
check_x() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
ChiBarSquared (class in nipy.algorithms.statistics.rft)
ChiSquared (class in nipy.algorithms.statistics.rft)
clamp() (in module nipy.algorithms.registration.histogram_registration)
Classifier (class in nipy.algorithms.statistics.classification)
cleanup() (nipy.utils.tmpdirs.InTemporaryDirectory method)
(nipy.utils.tmpdirs.TemporaryDirectory method)
clear (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
cliques() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
close() (nipy.io.imageformats.minc.netcdf_fileobj method)
closing() (nipy.neurospin.graph.field.Field method)
cluster_reproducibility() (in module nipy.neurospin.utils.reproducibility_measures)
cluster_stats() (in module nipy.neurospin.statistical_mapping)
cluster_threshold() (in module nipy.neurospin.utils.reproducibility_measures)
co_labelling() (in module nipy.neurospin.clustering.imm)
coeff() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
coefs (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
combinations() (in module nipy.algorithms.statistics.utils)
compare() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
compare_pretty() (nipy.modalities.fmri.formula.Beta static method)
(nipy.modalities.fmri.formula.FactorTerm static method)
(nipy.modalities.fmri.formula.Term static method)
compatible() (nipy.algorithms.statistics.rft.ECquasi method)
complete() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
complex() (in module nipy.algorithms.statistics.utils)
component_likelihood() (nipy.neurospin.clustering.ggmixture.GGGM method)
compose() (in module nipy.core.reference.coordinate_map)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.spline_transform.SplineTransform method)
(nipy.algorithms.registration.transform.Transform method)
composed_with() (nipy.neurospin.datasets.transforms.affine_transform.AffineTransform method)
(nipy.neurospin.datasets.transforms.transform.Transform method)
composed_with_transform() (nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
CompositionError (class in nipy.neurospin.datasets.transforms.transform)
Compute_Amers() (in module nipy.neurospin.spatial_models.structural_bfls)
compute_BSA_ipmi() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
compute_BSA_loo() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
compute_BSA_quick() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
compute_BSA_simple() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
compute_children() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
compute_cluster_stats() (in module nipy.neurospin.group.permutation_test)
compute_conditional_posterior_mean() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_contrasts() (in module nipy.neurospin.glm_files_layout.cortical_glm)
(in module nipy.neurospin.glm_files_layout.glm_tools)
compute_individual_regions() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
compute_inner_blocks() (nipy.neurospin.group.displacement_field.displacement_field method)
compute_log_conditional_displacements_posterior() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_conditional_posterior() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_posterior() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_prior() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_region_likelihood() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_region_likelihood_slow() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_voxel_likelihood() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_marginal_likelihood() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
compute_mask() (in module nipy.neurospin.mask)
(in module nipy.neurospin.utils.mask)
compute_mask_files() (in module nipy.neurospin.mask)
(in module nipy.neurospin.utils.mask)
compute_mask_sessions() (in module nipy.neurospin.mask)
(in module nipy.neurospin.utils.mask)
compute_region_stat() (in module nipy.neurospin.group.permutation_test)
concat_images() (in module nipy.io.imageformats.funcs)
concatenate_graphs() (in module nipy.neurospin.graph.graph)
conditional_posterior_proba() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
conjugate() (in module nipy.io.imageformats.quaternions)
(nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
conjunction() (in module nipy.neurospin.utils.reproducibility_measures)
constrained_voronoi() (nipy.neurospin.graph.field.Field method)
ContinuousROI (class in nipy.core.image.roi)
contour_map() (nipy.neurospin.viz_tools.ortho_slicer.OrthoSlicer method)
Contrast (class in nipy.modalities.fmri.fmristat.delay)
contrast (class in nipy.neurospin.glm.glm)
Contrast (class in nipy.neurospin.glm_files_layout.contrast_tools)
contrast() (nipy.neurospin.glm.glm.glm method)
(nipy.neurospin.statistical_mapping.LinearModel method)
contrast_from_cols_or_rows() (in module nipy.modalities.fmri.formula)
ContrastList (class in nipy.neurospin.glm_files_layout.contrast_tools)
converse_edge() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
convertToAscii() (nipy.neurospin.glm_files_layout.tio.Texture method)
convertToBinary() (nipy.neurospin.glm_files_layout.tio.Texture method)
convertToType() (nipy.neurospin.glm_files_layout.tio.Texture method)
convolve_functions() (in module nipy.modalities.fmri.utils)
convolve_regressors() (in module nipy.neurospin.utils.design_matrix)
coord_bsa() (in module nipy.neurospin.utils.reproducibility_measures)
coord_dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_transform() (in module nipy.neurospin.viz_tools.coord_tools)
CoordinateMap (class in nipy.core.reference.coordinate_map)
CoordinateMapROI (class in nipy.core.image.roi)
CoordinateSystem (class in nipy.core.reference.coordinate_system)
CoordinateSystemError (class in nipy.core.reference.coordinate_system)
copy (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
copy() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
(nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.glm_files_layout.tio.Texture method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
CorrelationCoefficient (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatio (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatioL1 (class in nipy.algorithms.registration.similarity_measures)
could_extract_minus_sign() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
count (nipy.core.image.roi.ROISequence attribute)
count() (nipy.io.imageformats.nifti1.Nifti1Extensions method)
count_ops() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
cov() (nipy.modalities.fmri.formula.RandomEffects method)
createDimension() (nipy.io.imageformats.minc.netcdf_fileobj method)
createVariable() (nipy.io.imageformats.minc.netcdf_fileobj method)
cross_eps() (nipy.neurospin.graph.graph.BipartiteGraph method)
cross_eps_robust() (nipy.neurospin.graph.graph.BipartiteGraph method)
cross_knn() (nipy.neurospin.graph.graph.BipartiteGraph method)
cross_validated_update() (nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
cube_with_strides_center() (in module nipy.algorithms.statistics.utils)
custom_watershed() (nipy.neurospin.graph.field.Field method)
cut_redundancies() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)

D

data (nipy.io.imageformats.compat.NiftiImage attribute)
(nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
data_generator() (in module nipy.core.image.generators)
DataError (class in nipy.utils.data)
Datasource (class in nipy.utils.data)
decompose2d() (in module nipy.algorithms.statistics.utils)
decompose3d() (in module nipy.algorithms.statistics.utils)
define() (in module nipy.modalities.fmri.formula)
(in module nipy.modalities.fmri.utils)
define_graph_attributes() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
degrees() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
demo_ortho_slicer() (in module nipy.neurospin.viz_tools.ortho_slicer)
demo_plot_map() (in module nipy.neurospin.viz_tools.activation_maps)
demo_plot_map_3d() (in module nipy.neurospin.viz_tools.maps_3d)
demo_ward_msb() (in module nipy.neurospin.clustering.bootstrap_hc)
denom_poly() (nipy.algorithms.statistics.rft.ECquasi method)
density() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
depth_from_leaves() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
deriv() (nipy.algorithms.statistics.rft.ECquasi method)
design() (nipy.modalities.fmri.formula.Factor method)
(nipy.modalities.fmri.formula.Formula method)
(nipy.modalities.fmri.formula.RandomEffects method)
design_expr (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
design_matrix() (in module nipy.neurospin.glm_files_layout.glm_tools)
DesignMatrix (class in nipy.neurospin.utils.design_matrix)
detsh() (in module nipy.neurospin.clustering.bgmm)
diagnose_binaryblock() (nipy.io.imageformats.analyze.AnalyzeHeader class method)
(nipy.io.imageformats.nifti1.Nifti1Header class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader class method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader class method)
diff() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
diffusion() (nipy.neurospin.graph.field.Field method)
dijkstra() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
dilation() (nipy.neurospin.graph.field.Field method)
dim_cmap() (in module nipy.neurospin.viz_tools.cm)
dirichlet_eval() (in module nipy.neurospin.clustering.bgmm)
DiscreteDomain (class in nipy.neurospin.spatial_models.discrete_domain)
DiscreteParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
DiscreteROI (class in nipy.core.image.roi)
displacement_field (class in nipy.neurospin.group.displacement_field)
display_results_html() (in module nipy.neurospin.glm_files_layout.html_result)
dist2loss() (in module nipy.algorithms.registration.similarity_measures)
dkl_dirichlet() (in module nipy.neurospin.clustering.bgmm)
dkl_gaussian() (in module nipy.neurospin.clustering.bgmm)
dkl_wishart() (in module nipy.neurospin.clustering.bgmm)
dmtx_from_csv() (in module nipy.neurospin.utils.design_matrix)
dmtx_light() (in module nipy.neurospin.utils.design_matrix)
doit() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
domain_from_array() (in module nipy.neurospin.spatial_models.discrete_domain)
domain_from_image() (in module nipy.neurospin.spatial_models.discrete_domain)
domain_from_mesh() (in module nipy.neurospin.spatial_models.discrete_domain)
dpmm() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
draw_cross() (nipy.neurospin.viz_tools.ortho_slicer.OrthoSlicer method)
draw_samples() (in module nipy.neurospin.utils.reproducibility_measures)
drop_io_dim() (in module nipy.core.reference.coordinate_map)
DTI
dtype (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
(nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
dummy_index (nipy.modalities.fmri.formula.Beta attribute)
dump() (nipy.neurospin.statistical_mapping.LinearModel method)
DWI

E

ECcone (class in nipy.algorithms.statistics.rft)
ECquasi (class in nipy.algorithms.statistics.rft)
EEGlab
em() (in module nipy.neurospin.group.mixed_effects)
empty_parcels() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
endianness (nipy.io.imageformats.analyze.AnalyzeHeader attribute)
(nipy.io.imageformats.nifti1.Nifti1Header attribute)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader attribute)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader attribute)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader attribute)
ENN (class in nipy.neurospin.utils.emp_null), [1]
eps() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
eps_Isomap (class in nipy.neurospin.eda.dimension_reduction)
equivalent() (in module nipy.core.reference.coordinate_map)
erosion() (nipy.neurospin.graph.field.Field method)
errno (nipy.utils.data.DataError attribute)
Estep() (nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
estimate() (nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
(nipy.neurospin.clustering.ggmixture.Gamma method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.utils.design_matrix.DesignMatrix method)
estimate_displacements_SA() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
estimate_mean() (in module nipy.algorithms.statistics.onesample)
estimate_motion() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
estimate_pooled_covariance() (in module nipy.modalities.fmri.spm.model)
estimate_varatio() (in module nipy.algorithms.statistics.onesample)
estimateAR() (in module nipy.modalities.fmri.fmristat.model)
Euclidian_distance() (in module nipy.neurospin.eda.dimension_reduction)
Euclidian_mds() (in module nipy.neurospin.eda.dimension_reduction)
euler2angle_axis() (in module nipy.io.imageformats.eulerangles)
euler2mat() (in module nipy.io.imageformats.eulerangles)
euler2quat() (in module nipy.io.imageformats.eulerangles)
eval() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
evalf() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
evaluate() (nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
event_design() (in module nipy.modalities.fmri.design)
EventRelatedParadigm (class in nipy.neurospin.utils.design_matrix)
events() (in module nipy.modalities.fmri.utils)
evidence() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
example_igmm_wnc() (in module nipy.neurospin.clustering.imm)
example_imm_1d() (in module nipy.neurospin.clustering.imm)
execute() (nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.spm.model.SecondStage method)
expand() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
explore() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
extend (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
extent (nipy.io.imageformats.compat.NiftiImage attribute)
extract_additively() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
extract_clusters_from_diam() (in module nipy.neurospin.group.permutation_test)
extract_clusters_from_graph() (in module nipy.neurospin.group.permutation_test)
extract_clusters_from_thresh() (in module nipy.neurospin.group.permutation_test)
extract_multiplicatively() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
eye() (in module nipy.io.imageformats.quaternions)

F

f_generator() (in module nipy.core.image.generators)
Factor (class in nipy.modalities.fmri.formula)
FactorTerm (class in nipy.modalities.fmri.formula)
fancy_plot() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
fancy_plot_() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
fdiff() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
FDR (class in nipy.neurospin.utils.emp_null)
fdr() (nipy.neurospin.utils.emp_null.ENN method), [1]
fdrcurve() (nipy.neurospin.utils.emp_null.ENN method), [1]
feature() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROIall method)
ffx() (in module nipy.neurospin.utils.ffx)
ffx_from_stat() (in module nipy.neurospin.utils.ffx)
Field (class in nipy.neurospin.graph.field)
field_from_coo_matrix_and_data() (in module nipy.neurospin.graph.field)
filename (nipy.utils.data.DataError attribute)
filespec_to_files() (nipy.io.imageformats.analyze.AnalyzeImage static method)
(nipy.io.imageformats.compat.NiftiImage static method)
(nipy.io.imageformats.minc.MincImage static method)
(nipy.io.imageformats.nifti1.Nifti1Image static method)
(nipy.io.imageformats.spatialimages.SpatialImage static method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage static method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage static method)
FileTuples (class in nipy.io.imageformats.filetuples)
FileTuplesError (class in nipy.io.imageformats.filetuples)
fillpositive() (in module nipy.io.imageformats.quaternions)
find_cut_coords() (in module nipy.neurospin.viz_tools.coord_tools)
find_data_dir() (in module nipy.utils.data)
find_mni_template() (in module nipy.neurospin.viz_tools.anat_cache)
finite_range() (in module nipy.io.imageformats.volumeutils)
fit() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.neurospin.glm.glm.glm method)
flip() (in module nipy.core.image.xyz_image)
flip_axis() (in module nipy.core.transforms.affines)
(in module nipy.io.imageformats.orientations)
floyd() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
fltcols() (in module nipy.interfaces.spm)
flush() (nipy.io.imageformats.minc.netcdf_fileobj method)
Fmask() (in module nipy.modalities.fmri.spm.model)
fmin_steepest() (in module nipy.algorithms.optimize)
FMRI
fmri_generator() (in module nipy.modalities.fmri.fmri)
FmriImageList (class in nipy.modalities.fmri.fmri)
FmriRealign4d (class in nipy.algorithms.registration.groupwise_registration)
fname_presuffix() (in module nipy.interfaces.spm)
fnames_presuffix() (in module nipy.interfaces.spm)
fnsum (class in nipy.algorithms.statistics.rft)
for_file_pair() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
Forest (class in nipy.neurospin.graph.forest)
Formula (class in nipy.modalities.fmri.formula)
formula (nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
four_to_three() (in module nipy.io.imageformats.funcs)
fourier_basis() (in module nipy.modalities.fmri.design)
(in module nipy.modalities.fmri.utils)
free_energy() (nipy.neurospin.segmentation.vem.VemTissueClassification method)
from_3d_grid() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
from_adjacency() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
from_filename() (nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage class method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
from_fileobj() (nipy.io.imageformats.analyze.AnalyzeHeader class method)
(nipy.io.imageformats.minc.MincHeader class method)
(nipy.io.imageformats.nifti1.Nifti1Extensions class method)
(nipy.io.imageformats.nifti1.Nifti1Header class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader class method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader class method)
from_files() (nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage class method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
from_filespec() (nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage class method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
from_image() (nipy.core.image.image_list.ImageList class method)
(nipy.core.image.xyz_image.XYZImage static method)
(nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage class method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
(nipy.modalities.fmri.fmri.FmriImageList class method)
from_mapping() (nipy.io.imageformats.analyze.AnalyzeHeader class method)
(nipy.io.imageformats.nifti1.Nifti1Header class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader class method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader class method)
from_matrix_vector() (in module nipy.core.transforms.affines)
(in module nipy.neurospin.datasets.transforms.affine_utils)
from_params() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
from_shape() (nipy.core.reference.array_coords.ArrayCoordMap static method)
from_start_step() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
fromarray() (in module nipy.core.image.image)
fromcol() (nipy.modalities.fmri.formula.Factor static method)
fromkeys() (nipy.neurospin.glm_files_layout.contrast_tools.Contrast static method)
fromrec() (nipy.modalities.fmri.formula.Factor static method)
(nipy.modalities.fmri.formula.Formula static method)
(nipy.modalities.fmri.formula.RandomEffects static method)
FSL
FStat (class in nipy.algorithms.statistics.rft)
fttest() (in module nipy.neurospin.utils.reproducibility_measures)
full_rank() (in module nipy.neurospin.utils.design_matrix)
fullrank() (in module nipy.modalities.fmri.formula)
func (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
fusion() (in module nipy.neurospin.clustering.hierarchical_clustering)
fwhm2resel() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
fwhm2sigma() (in module nipy.algorithms.kernel_smooth)

G

Gamma (class in nipy.neurospin.clustering.ggmixture)
gamma_expr() (in module nipy.modalities.fmri.hrf)
Gamma_Gaussian_fit() (in module nipy.neurospin.utils.emp_null)
gamma_params() (in module nipy.modalities.fmri.hrf)
gauss_dist() (in module nipy.neurospin.segmentation.vem)
gaussian_random_field (class in nipy.neurospin.group.displacement_field)
generate_all_brainvisa_paths() (in module nipy.neurospin.glm_files_layout.cortical_glm)
(in module nipy.neurospin.glm_files_layout.glm_tools)
generate_brainvisa_ouput_paths() (in module nipy.neurospin.glm_files_layout.cortical_glm)
(in module nipy.neurospin.glm_files_layout.glm_tools)
generate_normals() (in module nipy.neurospin.clustering.bgmm)
generate_output() (in module nipy.modalities.fmri.fmristat.model)
generate_perm() (in module nipy.neurospin.clustering.bgmm)
generate_Wishart() (in module nipy.neurospin.clustering.bgmm)
geodesic_kmeans() (nipy.neurospin.graph.field.Field method)
get (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
get_3d_peaks() (in module nipy.neurospin.statistical_mapping)
get_affine() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
get_axis_renames() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_base_affine() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_best_affine() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_bounds() (in module nipy.neurospin.datasets.transforms.affine_utils)
get_children() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
get_cluster_position_from_thresholded_map() (in module nipy.neurospin.utils.reproducibility_measures)
get_code() (nipy.io.imageformats.nifti1.Nifti1Extension method)
get_codes() (nipy.io.imageformats.nifti1.Nifti1Extensions method)
get_content() (nipy.io.imageformats.nifti1.Nifti1Extension method)
get_coord() (nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
get_data() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
(nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
get_data_dtype() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_data_offset() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_data_path() (in module nipy.utils.data)
get_data_shape() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_datatype() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_descendents() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
get_dictionnary() (nipy.neurospin.glm_files_layout.contrast_tools.ContrastList method)
get_dim_info() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_E() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
get_edges() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
get_feature() (nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
(nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
get_field() (nipy.neurospin.graph.field.Field method)
get_file_of_type() (nipy.io.imageformats.filetuples.FileTuples method)
get_filename() (nipy.utils.data.Datasource method)
(nipy.utils.data.VersionedDatasource method)
get_filenames() (nipy.io.imageformats.filetuples.FileTuples method)
get_header() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
get_height() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
get_home_dir() (in module nipy.utils.environment)
get_intent() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_intent_code() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_inverse() (nipy.neurospin.datasets.transforms.affine_transform.AffineTransform method)
(nipy.neurospin.datasets.transforms.transform.Transform method)
get_k() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
get_local_maxima() (nipy.neurospin.graph.field.Field method)
get_mask_bounds() (in module nipy.neurospin.viz_tools.coord_tools)
get_nipy_system_dir() (in module nipy.utils.environment)
get_nipy_user_dir() (in module nipy.utils.environment)
get_origin_affine() (nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
get_parents() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
get_peak_position_from_thresholded_map() (in module nipy.neurospin.utils.reproducibility_measures)
get_pkg_info() (in module nipy.pkg_info)
get_qform() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_qform_code() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_qform_quaternion() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_roi_feature() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.MultiROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
get_scaled_data() (nipy.io.imageformats.minc.MincHeader method)
get_sform() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_sform_code() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_shape() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
get_size() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
get_sizeondisk() (nipy.io.imageformats.nifti1.Nifti1Extension method)
(nipy.io.imageformats.nifti1.Nifti1Extensions method)
get_slice_code() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_slice_duration() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_slice_times() (nipy.io.imageformats.nifti1.Nifti1Header method)
get_slope_inter() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
get_term() (nipy.modalities.fmri.formula.Factor method)
get_transform() (nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_field.VolumeField method)
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
get_unscaled_data() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
get_unscaled_img() (in module nipy.neurospin.mask)
get_V() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
get_vertices() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
get_volume() (nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
get_weights() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
get_world_coords() (nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
get_zooms() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
getDataArray() (nipy.io.imageformats.compat.NiftiImage method)
getExtent() (nipy.io.imageformats.compat.NiftiImage method)
getFilename() (nipy.io.imageformats.compat.NiftiImage method)
getInverseQForm() (nipy.io.imageformats.compat.NiftiImage method)
getInverseSForm() (nipy.io.imageformats.compat.NiftiImage method)
getO() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
getomega() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
getparams() (in module nipy.modalities.fmri.formula)
getPixDims() (nipy.io.imageformats.compat.NiftiImage method)
getQForm() (nipy.io.imageformats.compat.NiftiImage method)
getQFormCode() (nipy.io.imageformats.compat.NiftiImage method)
getQOffset() (nipy.io.imageformats.compat.NiftiImage method)
getQOrientation() (nipy.io.imageformats.compat.NiftiImage method)
getQuaternion() (nipy.io.imageformats.compat.NiftiImage method)
getRepetitionTime() (nipy.io.imageformats.compat.NiftiImage method)
getScaledData() (nipy.io.imageformats.compat.NiftiImage method)
getSForm() (nipy.io.imageformats.compat.NiftiImage method)
getSFormCode() (nipy.io.imageformats.compat.NiftiImage method)
getSOrientation() (nipy.io.imageformats.compat.NiftiImage method)
getterms() (in module nipy.modalities.fmri.formula)
getTestCaseNames() (in module nipy.io.imageformats.testing.nosepatch)
(in module nipy.testing.nosepatch)
getTimepoints() (nipy.io.imageformats.compat.NiftiImage method)
getTimeUnit() (nipy.io.imageformats.compat.NiftiImage method)
getVolumeExtent() (nipy.io.imageformats.compat.NiftiImage method)
getVoxDims() (nipy.io.imageformats.compat.NiftiImage method)
getXYZUnit() (nipy.io.imageformats.compat.NiftiImage method)
getZ() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
GGGM (class in nipy.neurospin.clustering.ggmixture)
GGM (class in nipy.neurospin.clustering.ggmixture)
glm (class in nipy.neurospin.glm.glm)
glm_fit() (in module nipy.neurospin.glm_files_layout.cortical_glm)
(in module nipy.neurospin.glm_files_layout.glm_tools)
GMM (class in nipy.neurospin.clustering.gmm)
GPL
Graph (class in nipy.neurospin.graph.graph)
Grid (class in nipy.core.reference.array_coords)
grid_coords() (in module nipy.algorithms.registration.groupwise_registration)
grid_domain_from_array() (in module nipy.neurospin.spatial_models.discrete_domain)
grid_domain_from_image() (in module nipy.neurospin.spatial_models.discrete_domain)
grid_time() (nipy.algorithms.registration.groupwise_registration.Image4d method)
GridDescriptor (class in nipy.neurospin.clustering.gmm)
GridTransform (class in nipy.algorithms.registration.grid_transform)
group_reproducibility_metrics() (in module nipy.neurospin.utils.reproducibility_measures)
guess_priors() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
guess_regularizing() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)

H

has() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
has_all_symbols() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
has_any_symbols() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
has_key (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
has_piecewise (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
hdr_getterfunc() (in module nipy.io.imageformats.volumeutils)
Header (class in nipy.io.imageformats.headers)
header (nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.image.Image attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
(nipy.io.imageformats.compat.NiftiImage attribute)
HeaderDataError (class in nipy.io.imageformats.volumeutils)
HeaderTypeError (class in nipy.io.imageformats.volumeutils)
height_threshold() (nipy.neurospin.group.permutation_test.permutation_test method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample_graph method)
(nipy.neurospin.group.permutation_test.permutation_test_twosample method)
HierarchicalROI (class in nipy.neurospin.spatial_models.hroi)
histo_repro() (in module nipy.neurospin.utils.reproducibility_measures)
HistogramRegistration (class in nipy.algorithms.registration.histogram_registration)
homogeneity() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
Hotelling (class in nipy.algorithms.statistics.rft)
hparcel() (in module nipy.neurospin.spatial_models.hierarchical_parcellation)
hpd() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
HROI_as_discrete_domain_blobs() (in module nipy.neurospin.spatial_models.hroi)
HROI_from_watershed() (in module nipy.neurospin.spatial_models.hroi)

I

ICA
ideal_spacing() (in module nipy.algorithms.registration.histogram_registration)
identity() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
idx_affine_coord() (in module nipy.neurospin.spatial_models.discrete_domain)
if_datasource() (in module nipy.testing.decorators)
if_example_data() (in module nipy.testing.decorators)
if_templates() (in module nipy.testing.decorators)
IJK() (nipy.algorithms.registration.grid_transform.GridTransform method)
(nipy.algorithms.registration.grid_transform.SplineTransform method)
Image (class in nipy.core.image.image)
(class in nipy.neurospin.image.image)
Image4d (class in nipy.algorithms.registration.groupwise_registration)
ImageInterpolator (class in nipy.algorithms.interpolation)
ImageList (class in nipy.core.image.image_list)
IMM (class in nipy.neurospin.clustering.imm)
index (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
index() (nipy.core.reference.coordinate_system.CoordinateSystem method)
infer_latent_dim() (in module nipy.neurospin.eda.dimension_reduction)
init() (nipy.neurospin.clustering.ggmixture.GGGM method)
init_displacement_blocks() (nipy.neurospin.group.displacement_field.displacement_field method)
init_fdr() (nipy.neurospin.clustering.ggmixture.GGGM method)
init_hidden_variables() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
init_motion_detection() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
initialize() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
initialize_and_estimate() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
insert (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
instance_to_filename() (nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage class method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
integ() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
integrate() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
(nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
InTemporaryDirectory (class in nipy.utils.tmpdirs)
interp (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
interp() (in module nipy.modalities.fmri.utils)
interp_slice_order() (in module nipy.algorithms.registration.groupwise_registration)
intersect_masks() (in module nipy.neurospin.mask)
IntrinsicVolumes (class in nipy.algorithms.statistics.rft)
inv() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
inv_affine (nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
inverse() (in module nipy.io.imageformats.quaternions)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
inverse_affine() (in module nipy.algorithms.registration.affine)
(in module nipy.neurospin.image.image)
inverse_mapping() (nipy.neurospin.datasets.transforms.affine_transform.AffineTransform method)
invertR() (in module nipy.modalities.fmri.fmristat.invert)
io_orientation() (in module nipy.core.transforms.affines)
(in module nipy.io.imageformats.orientations)
is_bounded (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_commutative (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_complex (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_composite (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_connected() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
is_direct (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
is_even (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_factor() (in module nipy.modalities.fmri.formula)
is_factor_term() (in module nipy.modalities.fmri.formula)
is_finite (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_formula() (in module nipy.modalities.fmri.formula)
is_hypergeometric() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
is_image() (in module nipy.core.image.image)
is_imaginary (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_infinitesimal (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_integer (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_irrational (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_negative (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_noninteger (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_nonnegative (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_nonpositive (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_nonzero (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_number (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_odd (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_polynomial() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
is_positive (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_prime (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_rational (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_rational_function() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
is_real (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_term() (in module nipy.modalities.fmri.formula)
is_unbounded (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_zero (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
isfield() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
isleaf() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
isolated() (in module nipy.neurospin.utils.random_threshold)
isomap() (in module nipy.neurospin.eda.dimension_reduction)
isroot() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
isunit() (in module nipy.io.imageformats.quaternions)
items (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
items() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
iter_basic_args() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
iteritems (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
iterkeys (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
itervalues (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)

J

join_complexes() (in module nipy.algorithms.statistics.utils)

K

keys (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
keys() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
(nipy.io.imageformats.volumeutils.Recoder method)
kmeans() (in module nipy.neurospin.clustering.clustering)
knn() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
knn_Isomap (class in nipy.neurospin.eda.dimension_reduction)
knn_LE (class in nipy.neurospin.eda.dimension_reduction)
knn_LPP (class in nipy.neurospin.eda.dimension_reduction)
knownfailure() (in module nipy.testing.decorators)
Kruskal() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
Kruskal_dev() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)

L

lambdify_t() (in module nipy.modalities.fmri.utils)
LandmarkRegions (class in nipy.neurospin.spatial_models.structural_bfls)
laplace_dist() (in module nipy.neurospin.segmentation.vem)
largest_cc() (in module nipy.neurospin.mask)
LE() (in module nipy.neurospin.eda.dimension_reduction)
LE_dev() (in module nipy.neurospin.eda.dimension_reduction)
leadterm() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
learn() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.neurospin.utils.emp_null.ENN method), [1]
leaves_of_a_subtree() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
left_incidence() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
LGPL
like_from_data() (nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
likelihood() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
likelihood_under_the_prior() (nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
limit() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
linear_interp() (in module nipy.modalities.fmri.utils)
linear_model_fit() (in module nipy.neurospin.statistical_mapping)
LinearFilter (class in nipy.algorithms.kernel_smooth)
LinearModel (class in nipy.neurospin.statistical_mapping)
list_files() (nipy.utils.data.Datasource method)
(nipy.utils.data.VersionedDatasource method)
list_of_neighbors() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
list_of_subtrees() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
load() (in module nipy.io.files)
(in module nipy.io.imageformats.loadsave)
(in module nipy.neurospin.glm.glm)
(nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
load_image() (in module nipy.neurospin.glm_files_layout.glm_tools)
load_protocol_from_csv_file() (in module nipy.neurospin.utils.design_matrix)
load_texture() (in module nipy.neurospin.glm_files_layout.cortical_glm)
local_maxima() (nipy.neurospin.graph.field.Field method)
local_sym_normalize() (in module nipy.neurospin.eda.dimension_reduction)
log_gammainv_pdf() (in module nipy.neurospin.group.spatial_relaxation_onesample)
log_gaussian_pdf() (in module nipy.neurospin.group.spatial_relaxation_onesample)
log_likelihood_ratio() (in module nipy.neurospin.group.mixed_effects)
log_raise() (nipy.io.imageformats.batteryrunners.Report method)
loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
LPP() (in module nipy.neurospin.eda.dimension_reduction)
lseries() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)

M

m2screenshot() (in module nipy.neurospin.viz_tools.maps_3d)
main() (in module nipy.neurospin.clustering.imm)
(in module nipy.testing.nitest)
(in module nipy.utils.perlpie)
main_cc() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
main_effect (nipy.modalities.fmri.formula.Factor attribute)
make_bsa_image() (in module nipy.neurospin.spatial_models.bsa_io)
make_datasource() (in module nipy.utils.data)
make_dt_codes() (in module nipy.io.imageformats.volumeutils)
make_feature() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
make_feature_from_info() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
make_forest() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
make_graph() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
make_grid() (nipy.neurospin.clustering.gmm.GridDescriptor method)
make_hroi_from_subdomain() (in module nipy.neurospin.spatial_models.hroi)
make_job() (in module nipy.interfaces.spm)
make_label_dec() (in module nipy.testing.decorators)
make_recarray() (in module nipy.modalities.fmri.formula)
map_label() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
map_reproducibility() (in module nipy.neurospin.utils.reproducibility_measures)
mapping() (nipy.neurospin.datasets.transforms.affine_transform.AffineTransform method)
mask (nipy.neurospin.image.image.MaskedImage attribute)
mask() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.ROIall method)
(nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
mask_intersection() (in module nipy.neurospin.statistical_mapping)
mask_parcellation() (in module nipy.neurospin.spatial_models.parcel_io)
MaskedImage (class in nipy.neurospin.image.image)
mat2euler() (in module nipy.io.imageformats.eulerangles)
mat2quat() (in module nipy.io.imageformats.quaternions)
match() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
match_trivial() (in module nipy.neurospin.graph.BPmatch)
matches() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
Matlab
matrix44() (in module nipy.algorithms.registration.affine)
matrix_generator() (in module nipy.core.image.generators)
max_dist() (in module nipy.neurospin.group.permutation_test)
maximum_link_distance() (in module nipy.neurospin.clustering.hierarchical_clustering)
maximum_link_distance_segment() (in module nipy.neurospin.clustering.hierarchical_clustering)
maximum_link_euclidian() (in module nipy.neurospin.clustering.hierarchical_clustering)
MDS (class in nipy.neurospin.eda.dimension_reduction)
mds() (in module nipy.neurospin.eda.dimension_reduction)
mds_embedding() (in module nipy.neurospin.eda.dimension_reduction)
mds_parameters() (in module nipy.neurospin.eda.dimension_reduction)
mean (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
merge() (in module nipy.neurospin.spatial_models.structural_bfls)
merge_ascending() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
merge_descending() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
merge_simple_branches() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
message (nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.transforms.affines.OrientationError attribute)
(nipy.io.imageformats.batteryrunners.Report attribute)
(nipy.io.imageformats.filename_parser.TypesFilenamesError attribute)
(nipy.io.imageformats.filetuples.FileTuplesError attribute)
(nipy.io.imageformats.minc.MincError attribute)
(nipy.io.imageformats.orientations.OrientationError attribute)
(nipy.io.imageformats.volumeutils.HeaderDataError attribute)
(nipy.io.imageformats.volumeutils.HeaderTypeError attribute)
(nipy.neurospin.datasets.transforms.transform.CompositionError attribute)
(nipy.utils.data.DataError attribute)
mfx_ttest() (in module nipy.neurospin.utils.reproducibility_measures)
MincError (class in nipy.io.imageformats.minc)
MincHeader (class in nipy.io.imageformats.minc)
MincImage (class in nipy.io.imageformats.minc)
MixedIMM (class in nipy.neurospin.clustering.imm)
mixture_likelihood() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
mlab_tempfile() (in module nipy.interfaces.matlab)
model_generator() (in module nipy.modalities.fmri.fmristat.model)
ModelOutputImage (class in nipy.modalities.fmri.fmristat.model)
msid() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
mst() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
Mstep() (nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
mu_ball() (in module nipy.algorithms.statistics.rft)
mu_sphere() (in module nipy.algorithms.statistics.rft)
mult() (in module nipy.io.imageformats.quaternions)
MultilinearForm (class in nipy.algorithms.statistics.rft)
multinomial() (in module nipy.neurospin.clustering.bgmm)
MultiROI (class in nipy.neurospin.spatial_models.mroi)
multivariate_stat (class in nipy.neurospin.group.spatial_relaxation_onesample)
MutualInformation (class in nipy.algorithms.registration.similarity_measures)

N

n() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
name (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
natural_spline() (in module nipy.modalities.fmri.design)
(in module nipy.modalities.fmri.formula)
NDGridDomain (class in nipy.neurospin.spatial_models.discrete_domain)
ndim() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
nearly_equivalent() (in module nipy.io.imageformats.quaternions)
needs_review() (in module nipy.testing.decorators)
netcdf_fileobj (class in nipy.io.imageformats.minc)
new() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
New_Parcellation (class in nipy.neurospin.spatial_models.parcellation)
next() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROIall method)
(nipy.modalities.fmri.fmri.FmriImageList method)
ni_affine_pixdim_from_affine() (in module nipy.io.nifti_ref)
Nifti1Extension (class in nipy.io.imageformats.nifti1)
Nifti1Extensions (class in nipy.io.imageformats.nifti1)
Nifti1Header (class in nipy.io.imageformats.nifti1)
Nifti1Image (class in nipy.io.imageformats.nifti1)
NiftiImage (class in nipy.io.imageformats.compat)
nipy.algorithms.diagnostics.screens (module)
nipy.algorithms.diagnostics.timediff (module)
nipy.algorithms.diagnostics.tsdiffplot (module)
nipy.algorithms.fwhm (module)
nipy.algorithms.interpolation (module)
nipy.algorithms.kernel_smooth (module)
nipy.algorithms.optimize (module)
nipy.algorithms.registration.affine (module)
nipy.algorithms.registration.chain_transform (module)
nipy.algorithms.registration.grid_transform (module)
nipy.algorithms.registration.groupwise_registration (module)
nipy.algorithms.registration.histogram_registration (module)
nipy.algorithms.registration.resample (module)
nipy.algorithms.registration.similarity_measures (module)
nipy.algorithms.registration.spline_transform (module)
nipy.algorithms.registration.transform (module)
nipy.algorithms.resample (module)
nipy.algorithms.statistics.classification (module)
nipy.algorithms.statistics.nlsmodel (module)
nipy.algorithms.statistics.onesample (module)
nipy.algorithms.statistics.regression (module)
nipy.algorithms.statistics.rft (module)
nipy.algorithms.statistics.utils (module)
nipy.core.image.affine_image (module)
nipy.core.image.generators (module)
nipy.core.image.image (module)
nipy.core.image.image_list (module)
nipy.core.image.roi (module)
nipy.core.image.xyz_image (module)
nipy.core.reference.array_coords (module)
nipy.core.reference.coordinate_map (module)
nipy.core.reference.coordinate_system (module)
nipy.core.reference.slices (module)
nipy.core.transforms.affines (module)
nipy.interfaces.matlab (module)
nipy.interfaces.spm (module)
nipy.io.files (module)
nipy.io.imageformats.analyze (module)
nipy.io.imageformats.batteryrunners (module)
nipy.io.imageformats.binaryheaders (module)
nipy.io.imageformats.compat (module)
nipy.io.imageformats.eulerangles (module)
nipy.io.imageformats.filename_parser (module)
nipy.io.imageformats.filetuples (module)
nipy.io.imageformats.funcs (module)
nipy.io.imageformats.header_ufuncs (module)
nipy.io.imageformats.headers (module)
nipy.io.imageformats.loadsave (module)
nipy.io.imageformats.minc (module)
nipy.io.imageformats.nifti1 (module)
nipy.io.imageformats.orientations (module)
nipy.io.imageformats.quaternions (module)
nipy.io.imageformats.spatialimages (module)
nipy.io.imageformats.spm2analyze (module)
nipy.io.imageformats.spm99analyze (module)
nipy.io.imageformats.testing.lightunit (module)
nipy.io.imageformats.testing.nosepatch (module)
nipy.io.imageformats.volumeutils (module)
nipy.io.nifti_ref (module)
nipy.modalities.fmri.design (module)
nipy.modalities.fmri.fmri (module)
nipy.modalities.fmri.fmristat.delay (module)
nipy.modalities.fmri.fmristat.hrf (module)
nipy.modalities.fmri.fmristat.invert (module)
nipy.modalities.fmri.fmristat.model (module)
nipy.modalities.fmri.formula (module)
nipy.modalities.fmri.hrf (module)
nipy.modalities.fmri.pca (module)
nipy.modalities.fmri.spm.correlation (module)
nipy.modalities.fmri.spm.model (module)
nipy.modalities.fmri.spm.reml (module)
nipy.modalities.fmri.spm.trace (module)
nipy.modalities.fmri.utils (module)
nipy.neurospin.clustering.bgmm (module)
nipy.neurospin.clustering.bootstrap_hc (module)
nipy.neurospin.clustering.clustering (module)
nipy.neurospin.clustering.ggmixture (module)
nipy.neurospin.clustering.gmm (module)
nipy.neurospin.clustering.hierarchical_clustering (module)
nipy.neurospin.clustering.imm (module)
nipy.neurospin.datasets.converters (module)
nipy.neurospin.datasets.transforms.affine_transform (module)
nipy.neurospin.datasets.transforms.affine_utils (module)
nipy.neurospin.datasets.transforms.transform (module)
nipy.neurospin.datasets.volumes.volume_data (module)
nipy.neurospin.datasets.volumes.volume_field (module)
nipy.neurospin.datasets.volumes.volume_grid (module)
nipy.neurospin.datasets.volumes.volume_img (module)
nipy.neurospin.eda.dimension_reduction (module)
nipy.neurospin.glm.glm (module)
nipy.neurospin.glm_files_layout.contrast_tools (module)
nipy.neurospin.glm_files_layout.cortical_glm (module)
nipy.neurospin.glm_files_layout.glm_tools (module)
nipy.neurospin.glm_files_layout.html_result (module)
nipy.neurospin.glm_files_layout.tio (module)
nipy.neurospin.graph.BPmatch (module)
nipy.neurospin.graph.field (module)
nipy.neurospin.graph.forest (module)
nipy.neurospin.graph.graph (module)
nipy.neurospin.group.displacement_field (module)
nipy.neurospin.group.mixed_effects (module)
nipy.neurospin.group.permutation_test (module)
nipy.neurospin.group.spatial_relaxation_onesample (module)
nipy.neurospin.image.image (module)
nipy.neurospin.mask (module)
nipy.neurospin.segmentation.vem (module)
nipy.neurospin.spatial_models.bayesian_structural_analysis (module)
nipy.neurospin.spatial_models.bsa_io (module)
nipy.neurospin.spatial_models.discrete_domain (module)
nipy.neurospin.spatial_models.hierarchical_parcellation (module)
nipy.neurospin.spatial_models.hroi (module)
nipy.neurospin.spatial_models.mroi (module)
nipy.neurospin.spatial_models.parcel_io (module)
nipy.neurospin.spatial_models.parcellation (module)
nipy.neurospin.spatial_models.structural_bfls (module)
nipy.neurospin.statistical_mapping (module)
nipy.neurospin.utils.design_matrix (module)
nipy.neurospin.utils.emp_null (module)
nipy.neurospin.utils.ffx (module)
nipy.neurospin.utils.random_threshold (module)
nipy.neurospin.utils.reproducibility_measures (module)
nipy.neurospin.utils.simul_multisubject_fmri_dataset (module)
nipy.neurospin.utils.zscore (module)
nipy.neurospin.viz_tools.activation_maps (module)
nipy.neurospin.viz_tools.anat_cache (module)
nipy.neurospin.viz_tools.cm (module)
nipy.neurospin.viz_tools.coord_tools (module)
nipy.neurospin.viz_tools.maps_3d (module)
nipy.neurospin.viz_tools.ortho_slicer (module)
nipy.neurospin.viz_tools.test.test_coord_tools (module)
nipy.pkg_info (module)
nipy.testing.decorators (module)
nipy.testing.lightunit (module)
nipy.testing.nitest (module)
nipy.testing.nosepatch (module)
nipy.utils.data (module)
nipy.utils.environment (module)
nipy.utils.onetime (module)
nipy.utils.perlpie (module)
nipy.utils.tmpdirs (module)
NLDR (class in nipy.neurospin.eda.dimension_reduction)
NLSModel (class in nipy.algorithms.statistics.nlsmodel)
nonzero() (in module nipy.algorithms.registration.similarity_measures)
(in module nipy.neurospin.group.mixed_effects)
norm() (in module nipy.io.imageformats.quaternions)
normal() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
normal_eval() (in module nipy.neurospin.clustering.bgmm)
normalize() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
NormalizedMutualInformation (class in nipy.algorithms.registration.similarity_measures)
npoints() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
nseries() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
null_distribution() (in module nipy.neurospin.utils.random_threshold)

O

OLS (class in nipy.modalities.fmri.fmristat.model)
ols() (in module nipy.neurospin.glm.glm)
one_subj_parcellation() (in module nipy.neurospin.spatial_models.parcel_io)
onesample_stat() (in module nipy.neurospin.group.permutation_test)
onesample_test() (in module nipy.neurospin.statistical_mapping)
OneSidedF (class in nipy.algorithms.statistics.rft)
OneTimeProperty (class in nipy.utils.onetime)
opening() (nipy.neurospin.graph.field.Field method)
optim_hparcel() (in module nipy.neurospin.spatial_models.hierarchical_parcellation)
optimize() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
orientation_affine() (in module nipy.core.transforms.affines)
(in module nipy.io.imageformats.orientations)
OrientationError (class in nipy.core.transforms.affines)
(class in nipy.io.imageformats.orientations)
orth() (in module nipy.modalities.fmri.spm.reml)
Orthonormalize() (in module nipy.neurospin.eda.dimension_reduction)
OrthoSlicer (class in nipy.neurospin.viz_tools.ortho_slicer)
output_AR1() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
output_F() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
output_resid() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
output_T() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
overall_loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)

P

Paradigm (class in nipy.neurospin.utils.design_matrix)
param (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
(nipy.algorithms.registration.chain_transform.ChainTransform attribute)
(nipy.algorithms.registration.grid_transform.GridTransform attribute)
(nipy.algorithms.registration.grid_transform.SplineTransform attribute)
(nipy.algorithms.registration.spline_transform.SplineTransform attribute)
(nipy.algorithms.registration.transform.Transform attribute)
parameters() (nipy.neurospin.clustering.ggmixture.Gamma method)
(nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
params (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
parcel_input() (in module nipy.neurospin.spatial_models.parcel_io)
Parcellation (class in nipy.neurospin.spatial_models.parcellation)
Parcellation_based_analysis() (in module nipy.neurospin.spatial_models.parcel_io)
Parcellation_output() (in module nipy.neurospin.spatial_models.parcel_io)
parcellation_output_with_paths() (in module nipy.neurospin.spatial_models.parcel_io)
parcels() (in module nipy.core.image.generators)
partial_floyd_graph() (in module nipy.neurospin.eda.dimension_reduction)
partition() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
ParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
PCA
(class in nipy.neurospin.eda.dimension_reduction)
pca() (in module nipy.modalities.fmri.pca)
pca_image() (in module nipy.modalities.fmri.pca)
peak_reproducibility() (in module nipy.neurospin.utils.reproducibility_measures)
peak_XYZ() (in module nipy.neurospin.group.permutation_test)
perl_dash_pie() (in module nipy.utils.perlpie)
perm_prfx() (in module nipy.neurospin.spatial_models.hierarchical_parcellation)
permutation_test (class in nipy.neurospin.group.permutation_test)
permutation_test_onesample (class in nipy.neurospin.group.permutation_test)
permutation_test_onesample_graph (class in nipy.neurospin.group.permutation_test)
permutation_test_twosample (class in nipy.neurospin.group.permutation_test)
PET
pixdim (nipy.io.imageformats.compat.NiftiImage attribute)
pkg_commit_hash() (in module nipy.pkg_info)
plot() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.utils.emp_null.ENN method), [1]
plot2() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
plot2D() (in module nipy.neurospin.clustering.gmm)
plot_anat_3d() (in module nipy.neurospin.viz_tools.maps_3d), [1]
plot_feature() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
plot_height() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
plot_map() (in module nipy.neurospin.viz_tools.activation_maps), [1]
(nipy.neurospin.viz_tools.ortho_slicer.OrthoSlicer method)
plot_map_3d() (in module nipy.neurospin.viz_tools.maps_3d), [1]
plot_tsdiffs() (in module nipy.algorithms.diagnostics.tsdiffplot)
plot_tsdiffs_image() (in module nipy.algorithms.diagnostics.tsdiffplot)
plugin() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
pool() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROIall method)
pop (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
(nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
pop() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
popitem (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
population() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
posterior() (nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
pre_rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
precond (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
preconditioner() (in module nipy.algorithms.registration.affine)
predict() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
prepare_arrays() (in module nipy.neurospin.statistical_mapping)
pretty_mapping() (in module nipy.io.imageformats.volumeutils)
prevalence_density() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
PRFX() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
print_extended_help() (in module nipy.utils.perlpie)
print_field() (nipy.neurospin.graph.field.Field method)
probability_under_prior() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
product() (in module nipy.core.reference.coordinate_map)
(in module nipy.core.reference.coordinate_system)
propagate_upward() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
propagate_upward_and() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
pth_from_pvals() (nipy.neurospin.utils.emp_null.FDR method)
pvalue() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.neurospin.glm.glm.contrast method)
(nipy.neurospin.group.permutation_test.permutation_test method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample_graph method)
(nipy.neurospin.group.permutation_test.permutation_test_twosample method)

Q

Q() (in module nipy.algorithms.statistics.rft)
quasi() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
quat2angle_axis() (in module nipy.io.imageformats.quaternions)
quat2euler() (in module nipy.io.imageformats.eulerangles)
quat2mat() (in module nipy.io.imageformats.quaternions)

R

RandomEffects (class in nipy.modalities.fmri.formula)
randthresh() (in module nipy.neurospin.utils.random_threshold)
randthresh_connex() (in module nipy.neurospin.utils.random_threshold)
randthresh_fixwind_gaussnull() (in module nipy.neurospin.utils.random_threshold)
randthresh_fixwind_gaussnull_connex() (in module nipy.neurospin.utils.random_threshold)
randthresh_fixwind_knownull() (in module nipy.neurospin.utils.random_threshold)
randthresh_fixwind_knownull_connex() (in module nipy.neurospin.utils.random_threshold)
randthresh_main() (in module nipy.neurospin.utils.random_threshold)
randthresh_varwind_gaussnull() (in module nipy.neurospin.utils.random_threshold)
randthresh_varwind_gaussnull_connex() (in module nipy.neurospin.utils.random_threshold)
randthresh_varwind_knownull() (in module nipy.neurospin.utils.random_threshold)
randthresh_varwind_knownull_connex() (in module nipy.neurospin.utils.random_threshold)
rank() (in module nipy.modalities.fmri.formula)
RD_cliques() (in module nipy.neurospin.spatial_models.structural_bfls)
read() (nipy.neurospin.glm_files_layout.tio.Texture static method)
read_data() (in module nipy.io.imageformats.header_ufuncs)
read_from_csv() (nipy.neurospin.utils.design_matrix.DesignMatrix method)
read_unscaled_data() (in module nipy.io.imageformats.header_ufuncs)
Realign4d (class in nipy.algorithms.registration.groupwise_registration)
realign4d() (in module nipy.algorithms.registration.groupwise_registration)
Realign4d_Algorithm (class in nipy.algorithms.registration.groupwise_registration)
Recoder (class in nipy.io.imageformats.volumeutils)
reduce() (nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
reduce_coo_matrix() (in module nipy.neurospin.spatial_models.discrete_domain)
reduce_to_leaves() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
reference (nipy.core.image.xyz_image.XYZImage attribute)
reference() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
RegressionOutput (class in nipy.algorithms.statistics.regression)
RegressionOutputList (class in nipy.algorithms.statistics.regression)
reml() (in module nipy.modalities.fmri.spm.reml)
remove (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
remove_edges() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
remove_feature() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
remove_trivial_edges() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
removeO() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
renamed_axes() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
renamed_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_reference() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
reorder() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
reorder_from_leaves_to_roots() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
reordered_axes() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
reordered_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_reference() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
replace_inside() (in module nipy.neurospin.viz_tools.cm)
Report (class in nipy.io.imageformats.batteryrunners)
representative_feature() (nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
resample() (in module nipy.algorithms.registration.resample)
(in module nipy.algorithms.resample)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
resample4d() (in module nipy.algorithms.registration.groupwise_registration)
resample_all_inmask() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
resample_img2img() (in module nipy.algorithms.resample)
resample_inmask() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
resampled_to_affine() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
resampled_to_img() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
resel2fwhm() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
ReselImage (class in nipy.algorithms.fwhm)
Resels (class in nipy.algorithms.fwhm)
results_generator() (in module nipy.modalities.fmri.fmristat.model)
reverse (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
rewrite() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
right_incidence() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
Rigid (class in nipy.algorithms.registration.affine)
Rigid2D (class in nipy.algorithms.registration.affine)
ROC() (nipy.neurospin.clustering.ggmixture.GGGM method)
ROI (class in nipy.core.image.roi)
roi_confidence() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
roi_ellipse_fn() (in module nipy.core.image.roi)
roi_from_array_sampling_coordmap() (in module nipy.core.image.roi)
roi_prevalence() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
roi_sphere_fn() (in module nipy.core.image.roi)
ROIall (class in nipy.core.image.roi)
ROISequence (class in nipy.core.image.roi)
rollaxis() (in module nipy.core.image.image)
rooted_subtree() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
rotate_vector() (in module nipy.io.imageformats.quaternions)
rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
rotation_mat2vec() (in module nipy.algorithms.registration.affine)
rotation_vec2mat() (in module nipy.algorithms.registration.affine)
Roy (class in nipy.algorithms.statistics.rft)
rtime (nipy.io.imageformats.compat.NiftiImage attribute)
run_jobdef() (in module nipy.interfaces.spm)
run_matlab() (in module nipy.interfaces.matlab)
run_matlab_script() (in module nipy.interfaces.matlab)

S

SAEM() (nipy.neurospin.clustering.ggmixture.GGGM method)
safe_dtype() (in module nipy.core.reference.coordinate_system)
safe_variance() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
sample() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.group.displacement_field.displacement_field method)
(nipy.neurospin.group.displacement_field.gaussian_random_field method)
sample_all_blocks() (nipy.neurospin.group.displacement_field.displacement_field method)
sample_and_average() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
sample_indicator() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
sample_log_conditional_posterior() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
save() (in module nipy.io.files)
(in module nipy.io.imageformats.loadsave)
(in module nipy.neurospin.datasets.converters)
(nipy.io.imageformats.analyze.AnalyzeImage class method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage class method)
(nipy.io.imageformats.nifti1.Nifti1Image class method)
(nipy.io.imageformats.spatialimages.SpatialImage class method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage class method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage class method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
(nipy.neurospin.glm.glm.glm method)
save_all_images() (in module nipy.neurospin.glm_files_layout.glm_tools)
save_all_textures() (in module nipy.neurospin.glm_files_layout.cortical_glm)
save_dic() (nipy.neurospin.glm_files_layout.contrast_tools.ContrastList method)
save_texture() (in module nipy.neurospin.glm_files_layout.cortical_glm)
save_volume() (in module nipy.neurospin.glm_files_layout.glm_tools)
save_volume_from_mask_image() (in module nipy.neurospin.glm_files_layout.glm_tools)
scale_min_max() (in module nipy.io.imageformats.volumeutils)
scale_space() (in module nipy.algorithms.statistics.rft)
scaling (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
scans_for_fname() (in module nipy.interfaces.spm)
scans_for_fnames() (in module nipy.interfaces.spm)
screen() (in module nipy.algorithms.diagnostics.screens)
SecondStage (class in nipy.modalities.fmri.spm.model)
segment_graph_rd() (in module nipy.neurospin.spatial_models.structural_bfls)
select() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.MultiROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
series() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
series_from_mask() (in module nipy.neurospin.mask)
set() (nipy.neurospin.clustering.gmm.GridDescriptor method)
(nipy.neurospin.image.image.Image method)
(nipy.neurospin.image.image.MaskedImage method)
set_constant_densities() (nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
set_data_dtype() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
set_data_shape() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
set_dim_info() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_dim_info_from_names() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_drift() (in module nipy.neurospin.utils.design_matrix)
set_edges() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
set_euclidian() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
set_feature() (nipy.neurospin.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.discrete_domain.StructuredDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
(nipy.neurospin.spatial_models.parcellation.Parcellation method)
(nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
set_field() (nipy.neurospin.graph.field.Field method)
set_file_of_type() (nipy.io.imageformats.filetuples.FileTuples method)
set_filenames() (nipy.io.imageformats.filetuples.FileTuples method)
set_gaussian() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
set_group_labels() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
set_height() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
set_info() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
set_intent() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_labels() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
set_origin_from_affine() (nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
set_priors() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
set_qform() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_roi_feature() (nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.MultiROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
set_sform() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_slice_duration() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_slice_times() (nipy.io.imageformats.nifti1.Nifti1Header method)
set_slope_inter() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
set_subjects() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
set_train_data() (nipy.neurospin.eda.dimension_reduction.eps_Isomap method)
(nipy.neurospin.eda.dimension_reduction.MDS method)
(nipy.neurospin.eda.dimension_reduction.NLDR method)
(nipy.neurospin.eda.dimension_reduction.PCA method)
(nipy.neurospin.eda.dimension_reduction.knn_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_LE method)
(nipy.neurospin.eda.dimension_reduction.knn_LPP method)
set_vector12() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
set_weights() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
set_zooms() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
setattr_on_read() (in module nipy.utils.onetime)
setDataArray() (nipy.io.imageformats.compat.NiftiImage method)
setdefault (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
setDescription() (nipy.io.imageformats.compat.NiftiImage method)
setFilename() (nipy.io.imageformats.compat.NiftiImage method)
setIntercept() (nipy.io.imageformats.compat.NiftiImage method)
setPixDims() (nipy.io.imageformats.compat.NiftiImage method)
setQFac() (nipy.io.imageformats.compat.NiftiImage method)
setQForm() (nipy.io.imageformats.compat.NiftiImage method)
setQFormCode() (nipy.io.imageformats.compat.NiftiImage method)
setQOffset() (nipy.io.imageformats.compat.NiftiImage method)
setQuaternion() (nipy.io.imageformats.compat.NiftiImage method)
setRepetitionTime() (nipy.io.imageformats.compat.NiftiImage method)
setSForm() (nipy.io.imageformats.compat.NiftiImage method)
setSFormCode() (nipy.io.imageformats.compat.NiftiImage method)
setSlope() (nipy.io.imageformats.compat.NiftiImage method)
setTimeUnit() (nipy.io.imageformats.compat.NiftiImage method)
setVoxDims() (nipy.io.imageformats.compat.NiftiImage method)
setXFormCode() (nipy.io.imageformats.compat.NiftiImage method)
setXYZUnit() (nipy.io.imageformats.compat.NiftiImage method)
shape (nipy.algorithms.registration.grid_transform.GridTransform attribute)
(nipy.algorithms.registration.grid_transform.SplineTransform attribute)
(nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
shape() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
shape_generator() (in module nipy.core.image.generators)
shifted_domain_origin() (in module nipy.core.reference.coordinate_map)
shifted_range_origin() (in module nipy.core.reference.coordinate_map)
show() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.ggmixture.GGGM method)
(nipy.neurospin.clustering.ggmixture.GGM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.glm_files_layout.tio.Texture method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.Graph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
(nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.neurospin.utils.design_matrix.DesignMatrix method)
show_components() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
sigma2fwhm() (in module nipy.algorithms.kernel_smooth)
signal_to_pproba() (in module nipy.neurospin.spatial_models.bayesian_structural_analysis)
Similarity (class in nipy.algorithms.registration.affine)
similarity (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
Similarity2D (class in nipy.algorithms.registration.affine)
SimilarityMeasure (class in nipy.algorithms.registration.similarity_measures)
simple_update() (nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
simulated_pvalue() (in module nipy.neurospin.statistical_mapping)
single_run_realign4d() (in module nipy.algorithms.registration.groupwise_registration)
size (nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
skeleton() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
slice_generator() (in module nipy.core.image.generators)
slice_parcels() (in module nipy.core.image.generators)
SliceMaker (class in nipy.core.image.image)
smatrix_from_3d_array() (in module nipy.neurospin.spatial_models.discrete_domain)
smatrix_from_3d_idx() (in module nipy.neurospin.spatial_models.discrete_domain)
smatrix_from_nd_array() (in module nipy.neurospin.spatial_models.discrete_domain)
smatrix_from_nd_idx() (in module nipy.neurospin.spatial_models.discrete_domain)
smooth() (nipy.algorithms.kernel_smooth.LinearFilter method)
smoothed_histogram_from_samples() (in module nipy.neurospin.utils.emp_null)
solve4linearsymbol() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
sort (nipy.core.image.roi.ROISequence attribute)
(nipy.io.imageformats.nifti1.Nifti1Extensions attribute)
sort_labels() (nipy.neurospin.segmentation.vem.VemTissueClassification method)
sort_mixmat() (nipy.neurospin.segmentation.vem.VemTissueClassification method)
sorted_values() (in module nipy.neurospin.group.permutation_test)
spatial_coordmap (nipy.core.image.affine_image.AffineImage attribute)
SpatialImage (class in nipy.io.imageformats.spatialimages)
spectral_decomposition() (in module nipy.modalities.fmri.fmristat.hrf)
spherical_search() (in module nipy.algorithms.statistics.rft)
SplineTransform (class in nipy.algorithms.registration.grid_transform)
(class in nipy.algorithms.registration.spline_transform)
split() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
split_affine() (in module nipy.algorithms.registration.groupwise_registration)
split_group() (in module nipy.neurospin.utils.reproducibility_measures)
splitext_addext() (in module nipy.io.imageformats.filename_parser)
SPM
SPM approach
SPM software
Spm2AnalyzeHeader (class in nipy.io.imageformats.spm2analyze)
Spm2AnalyzeImage (class in nipy.io.imageformats.spm2analyze)
Spm99AnalyzeHeader (class in nipy.io.imageformats.spm99analyze)
Spm99AnalyzeImage (class in nipy.io.imageformats.spm99analyze)
spm_path() (nipy.interfaces.spm.SpmInfo static method)
SpmAnalyzeHeader (class in nipy.io.imageformats.spm99analyze)
SpmInfo (class in nipy.interfaces.spm)
square_gaussian_filter() (in module nipy.neurospin.group.displacement_field)
square_gaussian_filter1d() (in module nipy.neurospin.group.displacement_field)
squeeze_image() (in module nipy.io.imageformats.funcs)
SSE() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
stack2designs() (in module nipy.modalities.fmri.design)
stack_contrasts() (in module nipy.modalities.fmri.design)
stack_designs() (in module nipy.modalities.fmri.design)
stat() (nipy.neurospin.glm.glm.contrast method)
statistics_from_position() (in module nipy.neurospin.utils.reproducibility_measures)
step_function() (in module nipy.modalities.fmri.utils)
stratify() (nipy.modalities.fmri.formula.Factor method)
strerror (nipy.utils.data.DataError attribute)
structarr (nipy.io.imageformats.analyze.AnalyzeHeader attribute)
(nipy.io.imageformats.nifti1.Nifti1Header attribute)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader attribute)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader attribute)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader attribute)
StructuredDomain (class in nipy.neurospin.spatial_models.discrete_domain)
subdomain_from_array() (in module nipy.neurospin.spatial_models.mroi)
subdomain_from_balls() (in module nipy.neurospin.spatial_models.mroi)
subdomain_from_image() (in module nipy.neurospin.spatial_models.mroi)
subdomain_from_position_and_image() (in module nipy.neurospin.spatial_models.mroi)
SubDomains (class in nipy.neurospin.spatial_models.mroi)
subfield() (nipy.neurospin.graph.field.Field method)
subforest() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
subgraph() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
subgraph_left() (nipy.neurospin.graph.graph.BipartiteGraph method)
subgraph_right() (nipy.neurospin.graph.graph.BipartiteGraph method)
subgrid_affine() (in module nipy.algorithms.registration.affine)
(in module nipy.neurospin.image.image)
subs() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.Factor method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Formula method)
(nipy.modalities.fmri.formula.RandomEffects method)
(nipy.modalities.fmri.formula.Term method)
subsample() (in module nipy.core.image.image)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
summary() (nipy.neurospin.glm.glm.contrast method)
SupervisedLikelihoodRatio (class in nipy.algorithms.registration.similarity_measures)
surrogate_3d_dataset() (in module nipy.neurospin.utils.simul_multisubject_fmri_dataset)
surrogate_4d_dataset() (in module nipy.neurospin.utils.simul_multisubject_fmri_dataset)
swiss_roll() (in module nipy.neurospin.eda.dimension_reduction)
symmeterize() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
sync() (nipy.io.imageformats.minc.netcdf_fileobj method)
synchronized_order() (in module nipy.core.image.image)

T

taylor_approx() (in module nipy.modalities.fmri.fmristat.hrf)
TemporaryDirectory (class in nipy.utils.tmpdirs)
tempTest() (in module nipy.neurospin.clustering.clustering)
Term (class in nipy.modalities.fmri.formula)
terms (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
terms() (in module nipy.modalities.fmri.formula)
test() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.eda.dimension_reduction.MDS method)
(nipy.neurospin.eda.dimension_reduction.NLDR method)
(nipy.neurospin.eda.dimension_reduction.PCA method)
(nipy.neurospin.eda.dimension_reduction.eps_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_LE method)
(nipy.neurospin.eda.dimension_reduction.knn_LPP method)
test_coord_transform_trivial() (in module nipy.neurospin.viz_tools.test.test_coord_tools)
test_EC2() (in module nipy.algorithms.statistics.utils)
test_EC3() (in module nipy.algorithms.statistics.utils)
test_find_cut_coords() (in module nipy.neurospin.viz_tools.test.test_coord_tools)
test_stat() (in module nipy.neurospin.utils.random_threshold)
Texture (class in nipy.neurospin.glm_files_layout.tio)
three_classes_GMM_fit() (in module nipy.neurospin.utils.emp_null)
threshold() (nipy.neurospin.utils.emp_null.ENN method), [1]
(nipy.neurospin.utils.emp_null.FDR method)
threshold_bifurcations() (nipy.neurospin.graph.field.Field method)
threshold_connect_components() (in module nipy.neurospin.mask)
threshold_from_student() (nipy.neurospin.utils.emp_null.FDR method)
time_slice_diffs() (in module nipy.algorithms.diagnostics.timediff)
title() (nipy.neurospin.viz_tools.ortho_slicer.OrthoSlicer method)
to_coo_matrix() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
to_filename() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
to_files() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
to_filespec() (nipy.io.imageformats.analyze.AnalyzeImage method)
(nipy.io.imageformats.compat.NiftiImage method)
(nipy.io.imageformats.minc.MincImage method)
(nipy.io.imageformats.nifti1.Nifti1Image method)
(nipy.io.imageformats.spatialimages.SpatialImage method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeImage method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeImage method)
to_image() (nipy.core.image.xyz_image.XYZImage method)
(nipy.neurospin.spatial_models.discrete_domain.NDGridDomain method)
(nipy.neurospin.spatial_models.hroi.HierarchicalROI method)
(nipy.neurospin.spatial_models.mroi.SubDomains method)
to_matrix_vector() (in module nipy.core.transforms.affines)
(in module nipy.neurospin.datasets.transforms.affine_utils)
to_neighb() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
tocoordmap() (nipy.core.image.roi.ContinuousROI method)
todiscrete() (nipy.core.image.roi.ContinuousROI method)
TOutput (class in nipy.algorithms.statistics.regression)
train() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
(nipy.neurospin.eda.dimension_reduction.MDS method)
(nipy.neurospin.eda.dimension_reduction.NLDR method)
(nipy.neurospin.eda.dimension_reduction.PCA method)
(nipy.neurospin.eda.dimension_reduction.eps_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_Isomap method)
(nipy.neurospin.eda.dimension_reduction.knn_LE method)
(nipy.neurospin.eda.dimension_reduction.knn_LPP method)
Transform (class in nipy.algorithms.registration.transform)
(class in nipy.neurospin.datasets.transforms.transform)
transform() (nipy.neurospin.image.image.Image method)
(nipy.neurospin.image.image.MaskedImage method)
translation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
transposed_values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
tree_depth() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.forest.Forest method)
trRV() (in module nipy.modalities.fmri.spm.trace)
TStat (class in nipy.algorithms.statistics.rft)
ttest() (in module nipy.neurospin.utils.reproducibility_measures)
twosample_stat() (in module nipy.neurospin.group.permutation_test)
twosample_test() (in module nipy.neurospin.statistical_mapping)
types_filenames() (in module nipy.io.imageformats.filename_parser)
TypesFilenamesError (class in nipy.io.imageformats.filename_parser)

U

uncorrected_threshold() (nipy.neurospin.utils.emp_null.ENN method), [1]
unload() (nipy.io.imageformats.compat.NiftiImage method)
UnsupportedDataType (class in nipy.io.imageformats.volumeutils)
unweighted_likelihood() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
unweighted_likelihood_() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
update (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
update() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.gmm.GMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
update_block() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_block_SA() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_displacements() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_displacements_SA() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_effects() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_labels() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_mean_effect() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_means() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
update_parameters_mcmc() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_parameters_saem() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_precisions() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
update_summary_statistics() (nipy.neurospin.group.spatial_relaxation_onesample.multivariate_stat method)
update_weights() (nipy.neurospin.clustering.bgmm.BGMM method)
(nipy.neurospin.clustering.bgmm.VBGMM method)
(nipy.neurospin.clustering.imm.IMM method)
(nipy.neurospin.clustering.imm.MixedIMM method)
updateCalMinMax() (nipy.io.imageformats.compat.NiftiImage method)
updateFromDict() (nipy.io.imageformats.compat.NiftiImage method)
updateHeader() (nipy.io.imageformats.compat.NiftiImage method)

V

validate_coords() (in module nipy.neurospin.image.image)
value_set() (nipy.io.imageformats.volumeutils.Recoder method)
values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
(nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
values() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.minc.MincHeader method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)
(nipy.neurospin.image.image.Image method)
(nipy.neurospin.image.image.MaskedImage method)
values_in_world() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.neurospin.datasets.volumes.volume_data.VolumeData method)
(nipy.neurospin.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.neurospin.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
var_feature_intra() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
variance() (nipy.algorithms.registration.groupwise_registration.Realign4d_Algorithm method)
variance_inter() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
variance_intra() (nipy.neurospin.spatial_models.parcellation.Parcellation method)
VBGMM (class in nipy.neurospin.clustering.bgmm)
ve_step() (nipy.neurospin.segmentation.vem.VemTissueClassification method)
VemTissueClassification (class in nipy.neurospin.segmentation.vem)
VersionedDatasource (class in nipy.utils.data)
viewitems (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
viewkeys (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
viewvalues (nipy.neurospin.glm_files_layout.contrast_tools.Contrast attribute)
vm_step() (nipy.neurospin.segmentation.vem.VemTissueClassification method)
vm_step_gauss() (in module nipy.neurospin.segmentation.vem)
vm_step_laplace() (in module nipy.neurospin.segmentation.vem)
volume2ball() (in module nipy.algorithms.statistics.rft)
VolumeData (class in nipy.neurospin.datasets.volumes.volume_data)
VolumeField (class in nipy.neurospin.datasets.volumes.volume_field)
VolumeGrid (class in nipy.neurospin.datasets.volumes.volume_grid)
VolumeImg (class in nipy.neurospin.datasets.volumes.volume_img)
voronoi() (in module nipy.neurospin.clustering.clustering)
Voronoi_diagram() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
Voronoi_Labelling() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
VoxBo
voxdim (nipy.io.imageformats.compat.NiftiImage attribute)
voxel
voxel_reproducibility() (in module nipy.neurospin.utils.reproducibility_measures)
voxel_thresholded_ttest() (in module nipy.neurospin.utils.reproducibility_measures)
vx2q() (nipy.io.imageformats.compat.NiftiImage method)
vx2s() (nipy.io.imageformats.compat.NiftiImage method)

W

ward() (in module nipy.neurospin.clustering.hierarchical_clustering)
(nipy.neurospin.graph.field.Field method)
ward_field_segment() (in module nipy.neurospin.clustering.hierarchical_clustering)
ward_msb() (in module nipy.neurospin.clustering.bootstrap_hc)
ward_quick() (in module nipy.neurospin.clustering.hierarchical_clustering)
ward_quick_segment() (in module nipy.neurospin.clustering.hierarchical_clustering)
ward_segment() (in module nipy.neurospin.clustering.hierarchical_clustering)
ward_simple() (in module nipy.neurospin.clustering.hierarchical_clustering)
water activation PET
weighted_feature_density() (nipy.neurospin.spatial_models.structural_bfls.LandmarkRegions method)
WeightedDegree() (nipy.neurospin.clustering.hierarchical_clustering.WeightedForest method)
(nipy.neurospin.graph.field.Field method)
(nipy.neurospin.graph.forest.Forest method)
(nipy.neurospin.graph.graph.BipartiteGraph method)
(nipy.neurospin.graph.graph.WeightedGraph method)
WeightedForest (class in nipy.neurospin.clustering.hierarchical_clustering)
WeightedGraph (class in nipy.neurospin.graph.graph)
wgraph_from_adjacency() (in module nipy.neurospin.graph.graph)
wgraph_from_coo_matrix() (in module nipy.neurospin.graph.graph)
wishart_eval() (in module nipy.neurospin.clustering.bgmm)
wmedian() (in module nipy.neurospin.segmentation.vem)
world (nipy.neurospin.image.image.Image attribute)
(nipy.neurospin.image.image.MaskedImage attribute)
write() (nipy.neurospin.glm_files_layout.tio.Texture method)
write_csv() (nipy.neurospin.utils.design_matrix.DesignMatrix method)
write_data() (in module nipy.core.image.generators)
(in module nipy.io.imageformats.header_ufuncs)
write_raise() (nipy.io.imageformats.batteryrunners.Report method)
write_scaled_data() (in module nipy.io.imageformats.header_ufuncs)
write_screen_res() (in module nipy.algorithms.diagnostics.screens)
write_to() (nipy.io.imageformats.analyze.AnalyzeHeader method)
(nipy.io.imageformats.nifti1.Nifti1Extension method)
(nipy.io.imageformats.nifti1.Nifti1Extensions method)
(nipy.io.imageformats.nifti1.Nifti1Header method)
(nipy.io.imageformats.spm2analyze.Spm2AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.Spm99AnalyzeHeader method)
(nipy.io.imageformats.spm99analyze.SpmAnalyzeHeader method)

X

xslice() (in module nipy.core.reference.slices)
xyz_ordered() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.neurospin.datasets.volumes.volume_img.VolumeImg method)
xyz_transform (nipy.core.image.xyz_image.XYZImage attribute)
XYZImage (class in nipy.core.image.xyz_image)
XYZTransform (class in nipy.core.image.xyz_image)

Y

yslice() (in module nipy.core.reference.slices)

Z

z_to_slice() (nipy.algorithms.registration.groupwise_registration.Image4d method)
zscore() (in module nipy.neurospin.utils.zscore)
(nipy.neurospin.glm.glm.contrast method)
(nipy.neurospin.group.permutation_test.permutation_test method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample method)
(nipy.neurospin.group.permutation_test.permutation_test_onesample_graph method)
(nipy.neurospin.group.permutation_test.permutation_test_twosample method)
zslice() (in module nipy.core.reference.slices)