NIPY documentation

Release:0.1.2.dev Date:February 21, 2011

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Contents:

• User Guide
  • Introduction
  • Download and Install
  • Tutorials
  • Glossary
• NeuroSpin tools
  • Mask-extraction utilities
  • Empirical null
  • Plotting of activation maps
  • Generating simulated activation maps
  • Image registration
  • Volumetrique data structures
• Developer Guide
  • Development quickstart
  • Developer installs for different distributions
  • Development Guidelines
  • Development Planning
  • Software Design
  • Defining use cases
  • Developer Tools
• FAQ
  • Why ...
  • Licensing
  • Documentation FAQ
• API
  • algorithms.diagnostics.screens
  • algorithms.diagnostics.timediff
  • algorithms.diagnostics.tsdiffplot
  • algorithms.fwhm
  • algorithms.interpolation
  • algorithms.kernel_smooth
  • algorithms.optimize
  • algorithms.registration.affine
  • algorithms.registration.chain_transform
  • algorithms.registration.grid_transform
  • algorithms.registration.groupwise_registration
  • algorithms.registration.histogram_registration
  • algorithms.registration.resample
  • algorithms.registration.similarity_measures
  • algorithms.registration.spline_transform
  • algorithms.registration.transform
  • algorithms.resample
  • algorithms.statistics.classification
  • algorithms.statistics.nlsmodel
  • algorithms.statistics.onesample
  • algorithms.statistics.regression
  • algorithms.statistics.rft
  • algorithms.statistics.utils
  • core.image.affine_image
  • core.image.generators
  • core.image.image
  • core.image.image_list
  • core.image.roi
  • core.image.xyz_image
  • core.reference.array_coords
  • core.reference.coordinate_map
  • core.reference.coordinate_system
  • core.reference.slices
  • core.transforms.affines
  • interfaces.matlab
  • interfaces.spm
  • io.files
  • io.imageformats.analyze
  • io.imageformats.batteryrunners
  • io.imageformats.binaryheaders
  • io.imageformats.compat
  • io.imageformats.eulerangles
  • io.imageformats.filename_parser
  • io.imageformats.filetuples
  • io.imageformats.funcs
  • io.imageformats.header_ufuncs
  • io.imageformats.headers
  • io.imageformats.loadsave
  • io.imageformats.minc
  • io.imageformats.nifti1
  • io.imageformats.orientations
  • io.imageformats.quaternions
  • io.imageformats.spatialimages
  • io.imageformats.spm2analyze
  • io.imageformats.spm99analyze
  • io.imageformats.testing.lightunit
  • io.imageformats.testing.nosepatch
  • io.imageformats.volumeutils
  • io.nifti_ref
  • modalities.fmri.design
  • modalities.fmri.fmri
  • modalities.fmri.fmristat.delay
  • modalities.fmri.fmristat.hrf
  • modalities.fmri.fmristat.invert
  • modalities.fmri.fmristat.model
  • modalities.fmri.formula
  • modalities.fmri.hrf
  • modalities.fmri.pca
  • modalities.fmri.spm.correlation
  • modalities.fmri.spm.model
  • modalities.fmri.spm.reml
  • modalities.fmri.spm.trace
  • modalities.fmri.utils
  • neurospin.clustering.bgmm
  • neurospin.clustering.bootstrap_hc
  • neurospin.clustering.clustering
  • neurospin.clustering.ggmixture
  • neurospin.clustering.gmm
  • neurospin.clustering.hierarchical_clustering
  • neurospin.clustering.imm
  • neurospin.datasets.converters
  • neurospin.datasets.transforms.affine_transform
  • neurospin.datasets.transforms.affine_utils
  • neurospin.datasets.transforms.transform
  • neurospin.datasets.volumes.volume_data
  • neurospin.datasets.volumes.volume_field
  • neurospin.datasets.volumes.volume_grid
  • neurospin.datasets.volumes.volume_img
  • neurospin.eda.dimension_reduction
  • neurospin.glm.glm
  • neurospin.glm_files_layout.contrast_tools
  • neurospin.glm_files_layout.cortical_glm
  • neurospin.glm_files_layout.glm_tools
  • neurospin.glm_files_layout.html_result
  • neurospin.glm_files_layout.tio
  • neurospin.graph.BPmatch
  • neurospin.graph.field
  • neurospin.graph.forest
  • neurospin.graph.graph
  • neurospin.group.displacement_field
  • neurospin.group.mixed_effects
  • neurospin.group.permutation_test
  • neurospin.group.spatial_relaxation_onesample
  • neurospin.image.image
  • neurospin.mask
  • neurospin.segmentation.vem
  • neurospin.spatial_models.bayesian_structural_analysis
  • neurospin.spatial_models.bsa_io
  • neurospin.spatial_models.discrete_domain
  • neurospin.spatial_models.hierarchical_parcellation
  • neurospin.spatial_models.hroi
  • neurospin.spatial_models.mroi
  • neurospin.spatial_models.parcel_io
  • neurospin.spatial_models.parcellation
  • neurospin.spatial_models.structural_bfls
  • neurospin.statistical_mapping
  • neurospin.utils.design_matrix
  • neurospin.utils.emp_null
  • neurospin.utils.ffx
  • neurospin.utils.random_threshold
  • neurospin.utils.reproducibility_measures
  • neurospin.utils.simul_multisubject_fmri_dataset
  • neurospin.utils.zscore
  • neurospin.viz_tools.activation_maps
  • neurospin.viz_tools.anat_cache
  • neurospin.viz_tools.cm
  • neurospin.viz_tools.coord_tools
  • neurospin.viz_tools.maps_3d
  • neurospin.viz_tools.ortho_slicer
  • neurospin.viz_tools.test.test_coord_tools
  • pkg_info
  • testing.decorators
  • testing.lightunit
  • testing.nitest
  • testing.nosepatch
  • utils.data
  • utils.environment
  • utils.onetime
  • utils.perlpie
  • utils.tmpdirs
• Publications
  • Peer-reviewed Publications
  • Posters
• NIPY License Information
  • Software License
  • Documentation License

• Index
• Module Index
• Search Page