Package picard.illumina.parser
Enum IlluminaDataType
- java.lang.Object
-
- java.lang.Enum<IlluminaDataType>
-
- picard.illumina.parser.IlluminaDataType
-
- All Implemented Interfaces:
Serializable
,Comparable<IlluminaDataType>
public enum IlluminaDataType extends Enum<IlluminaDataType>
List of data types of interest when parsing Illumina data. Because different Illumina versions splatter data of these types across different files, by specifying only the data types of interest, the number of files read can be reduced.
-
-
Enum Constant Summary
Enum Constants Enum Constant Description Barcodes
BaseCalls
PF
Position
QualityScores
-
Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static IlluminaDataType
valueOf(String name)
Returns the enum constant of this type with the specified name.static IlluminaDataType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
-
-
-
Enum Constant Detail
-
Position
public static final IlluminaDataType Position
-
BaseCalls
public static final IlluminaDataType BaseCalls
-
QualityScores
public static final IlluminaDataType QualityScores
-
PF
public static final IlluminaDataType PF
-
Barcodes
public static final IlluminaDataType Barcodes
-
-
Method Detail
-
values
public static IlluminaDataType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (IlluminaDataType c : IlluminaDataType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
-
valueOf
public static IlluminaDataType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
-
-