Package picard.vcf

Class VcfFormatConverter


  • @DocumentedFeature
    public class VcfFormatConverter
    extends CommandLineProgram
    Converts an ASCII VCF file to a binary BCF or vice versa.
    • Field Detail

      • LOG

        public static final htsjdk.samtools.util.Log LOG
      • INPUT

        @Argument(doc="The BCF or VCF input file.",
                  shortName="I")
        public File INPUT
      • OUTPUT

        @Argument(doc="The BCF or VCF output file name.",
                  shortName="O")
        public File OUTPUT
      • REQUIRE_INDEX

        @Argument(doc="Fail if an index is not available for the input VCF/BCF")
        public Boolean REQUIRE_INDEX
    • Constructor Detail

      • VcfFormatConverter

        public VcfFormatConverter()
    • Method Detail

      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.