Package picard.sam.SamErrorMetric
Class ReadBaseStratification.CollectionStratifier
- java.lang.Object
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- picard.sam.SamErrorMetric.ReadBaseStratification.CollectionStratifier
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- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier
- Enclosing class:
- ReadBaseStratification
public static class ReadBaseStratification.CollectionStratifier extends Object implements ReadBaseStratification.RecordAndOffsetStratifier
A CollectionStratifier is a stratifier that uses a collection of stratifiers to inform the stratification. For a given input, the result is the "Tuple" (actually repeated pairs) of outputs that the stratifiers return. The suffix for this stratifier is generated from the suffixes of the provided stratifiers.
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Constructor Summary
Constructors Constructor Description CollectionStratifier(Collection<ReadBaseStratification.RecordAndOffsetStratifier<?>> stratifiers)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getSuffix()
Comparable
stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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Constructor Detail
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CollectionStratifier
public CollectionStratifier(Collection<ReadBaseStratification.RecordAndOffsetStratifier<?>> stratifiers)
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Method Detail
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stratify
public Comparable stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
- Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier
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getSuffix
public String getSuffix()
- Specified by:
getSuffix
in interfaceReadBaseStratification.RecordAndOffsetStratifier
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