Package picard.sam.SamErrorMetric
Class ReadBaseStratification.NsInReadStratifier
- java.lang.Object
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- picard.sam.SamErrorMetric.ReadBaseStratification.NsInReadStratifier
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- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<Integer>
- Enclosing class:
- ReadBaseStratification
public static class ReadBaseStratification.NsInReadStratifier extends Object
Stratify by the number of Ns found in the read. This is particularly useful for data that has been consensus-called (a process that can add 'N' bases when there is no consensus)
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Constructor Summary
Constructors Constructor Description NsInReadStratifier()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getSuffix()
Integer
stratify(htsjdk.samtools.SAMRecord sam)
T
stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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Method Detail
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stratify
public Integer stratify(htsjdk.samtools.SAMRecord sam)
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getSuffix
public String getSuffix()
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stratify
public T stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
- Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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