Package picard.sam

Interface PrimaryAlignmentSelectionStrategy

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      void pickPrimaryAlignment​(picard.sam.HitsForInsert hitsForInsert)
      When this method returns, one alignment has been marked as primary according to the implementation's strategy.
    • Method Detail

      • pickPrimaryAlignment

        void pickPrimaryAlignment​(picard.sam.HitsForInsert hitsForInsert)
        When this method returns, one alignment has been marked as primary according to the implementation's strategy.