Package picard.analysis
Class GcBiasUtils
- java.lang.Object
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- picard.analysis.GcBiasUtils
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public class GcBiasUtils extends Object
Utilities to calculate GC Bias Created by kbergin on 9/23/15.
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Constructor Summary
Constructors Constructor Description GcBiasUtils()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static byte[]
calculateAllGcs(byte[] refBases, int lastWindowStart, int windowSize)
static int
calculateGc(byte[] bases, int startIndex, int endIndex, picard.analysis.GcBiasUtils.CalculateGcState state)
static int[]
calculateRefWindowsByGc(int windows, File referenceSequence, int windowSize)
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Method Detail
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calculateGc
public static int calculateGc(byte[] bases, int startIndex, int endIndex, picard.analysis.GcBiasUtils.CalculateGcState state)
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calculateRefWindowsByGc
public static int[] calculateRefWindowsByGc(int windows, File referenceSequence, int windowSize)
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calculateAllGcs
public static byte[] calculateAllGcs(byte[] refBases, int lastWindowStart, int windowSize)
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