Package picard.util

Class IntervalListToBed


  • @DocumentedFeature
    public class IntervalListToBed
    extends CommandLineProgram
    Trivially simple command line program to convert an IntervalList file to a BED file.
    • Field Detail

      • INPUT

        @Argument(shortName="I",
                  doc="Input IntervalList file.")
        public File INPUT
      • OUTPUT

        @Argument(shortName="O",
                  doc="Output BED file.")
        public File OUTPUT
      • SCORE

        @Argument(doc="The score, between 0-1000, to output for each interval in the BED file.")
        public int SCORE
      • SORT

        @Argument(doc="If true, sort the interval list prior to outputting as BED file.")
        public boolean SORT
    • Constructor Detail

      • IntervalListToBed

        public IntervalListToBed()
    • Method Detail

      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.