Namespaces | |
namespace | bio |
Classes | |
class | cwd_resource |
struct | cxx_group |
class | gid_not_found_error |
class | gname_not_found_error |
struct | cxx_passwd |
class | uid_not_found_error |
class | uname_not_found_error |
class | euid_egid_resource |
class | file_lock_resource |
class | error_backtracer |
class | exception |
class | runtime_error |
class | umask_resource |
Typedefs | |
typedef std::vector< std::string > | argvec_type |
Functions | |
template<typename _Tp > | |
std::basic_string< _Tp > | join (const std::basic_string< _Tp > &__sep, typename std::vector< std::basic_string< _Tp > >::const_iterator __begin, typename std::vector< std::basic_string< _Tp > >::const_iterator __end) |
template<typename _Tp > | |
std::basic_string< _Tp > | join (const std::basic_string< _Tp > &__sep, const std::vector< std::basic_string< _Tp > > &__v) |
template<typename _Tp > | |
std::basic_string< _Tp > | join (const _Tp *__sep, const std::vector< std::basic_string< _Tp > > &__v) |
template<typename _Tp > | |
std::basic_string< _Tp > | join (const _Tp __sep, const std::vector< std::basic_string< _Tp > > &__v) |
std::vector< std::string > | split (const std::string &__str, char __c) |
template<typename _Tk , typename _Tv > | |
std::vector< _Tk > | map_keys (const std::map< _Tk, _Tv > &__map) |
void | split_in_2 (const std::string &__str, char __c, std::string &__left, std::string &__right) |
std::map< std::string, std::string > | map_split_in_2 (const std::vector< std::string > &__svec, char __c) |
template<class _T1 , class _T2 > | |
std::ostream & | operator<< (std::ostream &os, const std::pair< _T1, _T2 > &v) |
std::pair output operator. | |
template<typename K , typename V , class C , class A > | |
std::ostream & | operator<< (std::ostream &os, const std::map< K, V, C, A > &m) |
std::map output operator. | |
template<typename _Tp , typename _Alloc > | |
std::ostream & | operator<< (std::ostream &os, const std::vector< _Tp, _Alloc > &v) |
std::vector output operator. | |
std::string | getgrgid_r (gid_t __gid) |
std::string | getgrgid_r (gid_t __gid, cxx_group &__group) |
gid_t | getgrnam_r (const std::string &__gname) |
gid_t | getgrnam_r (const std::string &__gname, struct cxx_group &__group) |
uid_t | getpwnam_r (const std::string &__uname) |
uid_t | getpwnam_r (const std::string &__uname, cxx_passwd &__passwd) |
std::string | getpwuid_r (uid_t __uid) |
std::string | getpwuid_r (uid_t __uid, cxx_passwd &__passwd) |
char | int2AAchar (int __aanum) |
int | AAchar2int (char __aachar) |
template<typename _Tp > | |
void | fwrite (const _Tp &__v, FILE *__out) |
template<typename _Tp , typename _Alloc > | |
void | fwrite (const vector< _Tp, _Alloc > &__v, FILE *__out) |
template<> | |
void | fwrite< string > (const string &__str, FILE *__out) |
void | fwrite (const char *__c, FILE *__out) |
template<typename _Tp > | |
void | fread (_Tp &__v, FILE *__in) |
template<typename _Tp , typename _Alloc > | |
void | fread (vector< _Tp, _Alloc > &__v, FILE *__in) |
template<> | |
void | fread< string > (string &__v, FILE *__in) |
template<typename _Tp > | |
_Tp | fread (FILE *__in) |
argvec_type | mkargvec (const char *__path,...) |
bool | file_exists (const std::string &__path) |
int | system (const char *__path,...) |
int | system (const std::vector< std::string > &__args) |
std::string | tolower (std::string __str) |
Variables | |
const signed char | blosum62 [27][27] |
BLOSUM62 matrix at a scale of ln(2)/2.0. | |
typedef std::vector<std::string> rostlab::argvec_type |
Definition at line 38 of file rostlab_stdlib.h.
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Definition at line 77 of file mapAA2int.h.
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Definition at line 48 of file rostlab_stdlib.h.
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Definition at line 46 of file rostlab_stdio.h.
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Definition at line 51 of file rostlab_stdio.h.
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Definition at line 70 of file rostlab_stdio.h.
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Definition at line 58 of file rostlab_stdio.h.
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Definition at line 28 of file rostlab_stdio.h.
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Definition at line 30 of file rostlab_stdio.h.
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Definition at line 43 of file rostlab_stdio.h.
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Definition at line 37 of file rostlab_stdio.h.
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Definition at line 28 of file mapAA2int.h.
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Definition at line 31 of file aux_functions.h.
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Definition at line 44 of file aux_functions.h.
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Definition at line 52 of file aux_functions.h.
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Definition at line 60 of file aux_functions.h.
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Definition at line 79 of file aux_functions.h.
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Definition at line 104 of file aux_functions.h.
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Definition at line 57 of file rostlab_stdlib.h.
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std::pair output operator.
The flags are:
Definition at line 155 of file aux_functions.h.
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std::map output operator.
Definition at line 165 of file aux_functions.h.
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std::vector output operator.
Definition at line 181 of file aux_functions.h.
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Definition at line 67 of file aux_functions.h.
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Definition at line 88 of file aux_functions.h.
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Definition at line 76 of file rostlab_stdlib.h.
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Definition at line 94 of file rostlab_stdlib.h.
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Definition at line 114 of file rostlab_stdlib.h.
const signed char rostlab::blosum62[27][27] |
BLOSUM62 matrix at a scale of ln(2)/2.0.
'*' is column/row 0; other capital letters are in column ( letter & 0x1f ). Columns/rows for non-aa letters such as o and u are 0. The matrix is symmetrical.