BamTools
2.4.1
|
▼NBamTools | Contains all BamTools classes & methods |
▼NAlgorithms | Provides convenient classes & methods for working with BAM data |
▼CSort | Provides classes & methods related to sorting BamAlignments |
CByName | Function object for comparing alignments by name |
CByPosition | Function object for comparing alignments by position |
CByTag | Function object for comparing alignments by tag value |
CUnsorted | Placeholder function object |
CBamAlignment | The main BAM alignment data structure |
CBamIndex | Provides methods for generating & loading BAM index files |
CBamMultiReader | Convenience class for reading multiple BAM files |
CBamReader | Provides read access to BAM files |
CBamRegion | Represents a sequential genomic region |
CBamWriter | Provides write access for generating BAM files |
CCigarOp | Represents a CIGAR alignment operation |
CCustomHeaderTag | |
CIBamIODevice | |
CRefData | Represents a reference sequence entry |
CSamHeader | Represents the SAM-formatted text header that is part of the BAM file header |
CSamProgram | Represents a SAM program record |
CSamProgramChain | Sorted container "chain" of SamProgram records |
CSamReadGroup | Represents a SAM read group entry |
CSamReadGroupDictionary | Container of SamReadGroup entries |
CSamSequence | Represents a SAM sequence entry |
CSamSequenceDictionary | Container of SamSequence entries |